(Q33485202)

27 July 2017

STEPS: Modeling and Simulating Complex Reaction-Diffusion Systems with Python (English)

1 reference

27 July 2017

1 reference

2

Erik De Schutter

1 reference

27 July 2017

Stefan Wils

1

1 reference

27 July 2017

29 June 2009

1 reference

Frontiers in Neuroinformatics

27 July 2017

1 reference

27 July 2017

3

1 reference

27 July 2017

15

1 reference

PubMed ID

19623245

describes a project that uses

27 July 2017

Python

1 reference

based on heuristic

inferred from title

maintained by WikiProject

WikiProject Software

0 references

cites work

An allosteric model of calmodulin explains differential activation of PP2B and CaMKII

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Comparing simulation results of SBML capable simulators

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Computational modeling of three-dimensional electrodiffusion in biological systems: application to the node of Ranvier

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Interoperability of neuroscience modeling software: current status and future directions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Anomalous diffusion in Purkinje cell dendrites caused by spines

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Stochastic simulation of chemical kinetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Transient calcium and dopamine increase PKA activity and DARPP-32 phosphorylation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Reaction diffusion modeling of calcium dynamics with realistic ER geometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

A model of the roles of essential kinases in the induction and expression of late long-term potentiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

The stability of a stochastic CaMKII switch: dependence on the number of enzyme molecules and protein turnover

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Stochastic reaction-diffusion simulation with MesoRD.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Space as the final frontier in stochastic simulations of biological systems

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Inositol 1,4,5-trisphosphate-dependent Ca2+ threshold dynamics detect spike timing in cerebellar Purkinje cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Models of cell signaling pathways

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Reaction kinetics in intracellular environments with macromolecular crowding: simulations and rate laws

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Confocal imaging and local photolysis of caged compounds: Dual probes of synaptic function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Effect of reactant size on discrete stochastic chemical kinetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Stochastic simulation of chemical reactions with spatial resolution and single molecule detail.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Exploration of signal transduction pathways in cerebellar long-term depression by kinetic simulation.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2706651

Models of calmodulin trapping and CaM kinase II activation in a dendritic spine

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19623245

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/NEURO.11.015.2009

1 reference

27 July 2017

journals/fini/WilsS09

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

27 July 2017

1 reference

PubMed ID

19623245