(Q33531416)

27 July 2017

title

MicroScope: a platform for microbial genome annotation and comparative genomics (English)

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27 July 2017

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S Engelen

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David Vallenet

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D Vallenet

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author name string

D Mornico

3

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27 July 2017

S Cruveiller

4

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27 July 2017

L Fleury

5

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27 July 2017

A Lajus

6

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27 July 2017

Z Rouy

7

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27 July 2017

D Roche

8

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27 July 2017

G Salvignol

9

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27 July 2017

C Scarpelli

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27 July 2017

C Médigue

11

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27 July 2017

publication date

25 November 2009

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27 July 2017

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27 July 2017

volume

2009

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27 July 2017

page(s)

bap021

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IMG ER: a system for microbial genome annotation expert review and curation

27 July 2017

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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RNAmmer: consistent and rapid annotation of ribosomal RNA genes

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system

21 June 2018

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MaGe: a microbial genome annotation system supported by synteny results

21 June 2018

1 reference

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ASAP: a resource for annotating, curating, comparing, and disseminating genomic data

21 June 2018

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TCDB: the Transporter Classification Database for membrane transport protein analyses and information

21 June 2018

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21 June 2018

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MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes

21 June 2018

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Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation

21 June 2018

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Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium

21 June 2018

1 reference

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PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis

21 June 2018

1 reference

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Determination of the core of a minimal bacterial gene set

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790312

Improved prediction of signal peptides: SignalP 3.0

21 June 2018

1 reference

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PeerGAD: a peer-review-based and community-centric web application for viewing and annotating prokaryotic genome sequences

21 June 2018

1 reference

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Enzyme-specific profiles for genome annotation: PRIAM

21 June 2018

1 reference

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21 June 2018

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21 June 2018

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21 June 2018

1 reference

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21 June 2018

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21 June 2018

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21 June 2018

1 reference

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21 June 2018

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Detecting protein function and protein-protein interactions from genome sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790312

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790312

A hidden Markov model for predicting transmembrane helices in protein sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790312

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790312

Chromosomal location of genes participating in the degradation of purines in Pseudomonas aeruginosa

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790312

Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains.

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FDATABASE%2FBAP021

Use of contiguity on the chromosome to predict functional coupling.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790312

A System for Automated Bacterial (genome) Integrated Annotation--SABIA

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20157493

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20157493

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/DATABASE/BAP021

1 reference

27 July 2017

1 reference

27 July 2017

1 reference