(Q33532968)

27 July 2017

GOing Bayesian: model-based gene set analysis of genome-scale data (English)

1 reference

27 July 2017

3

Peter N Robinson

0 references

Julien Gagneur

object named as

Julien Gagneur

series ordinal

2

0 references

Sebastian Bauer

series ordinal

1

object named as

Sebastian Bauer

1 reference

PubMed ID

20172960

27 July 2017

language of work or name

English

0 references

publication date

19 February 2010

1 reference

27 July 2017

Nucleic Acids Research

1 reference

27 July 2017

38

1 reference

27 July 2017

3523-3532

1 reference

27 July 2017

11

1 reference

Bidirectional promoters generate pervasive transcription in yeast

27 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

The GOA database in 2009--an integrated Gene Ontology Annotation resource

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

FlyBase: enhancing Drosophila Gene Ontology annotations

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

Gene set enrichment analysis using linear models and diagnostics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

A probabilistic generative model for GO enrichment analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

Use and misuse of the gene ontology annotations

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

Gene-set approach for expression pattern analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

Gene Ontology annotations at SGD: new data sources and annotation methods

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

Analyzing gene expression data in terms of gene sets: methodological issues

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

A high-resolution map of transcription in the yeast genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

BayGO: Bayesian analysis of ontology term enrichment in microarray data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

The pathophysiology of mitochondrial cell death

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

Variance stabilization applied to microarray data calibration and to the quantification of differential expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

Gene ontology: tool for the unification of biology

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

KEGG: kyoto encyclopedia of genes and genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2887944

Extensions to gene set enrichment.

14 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ045

An Introduction to MCMC for Machine Learning

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ045

The Markov chain Monte Carlo revolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ045

Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ045

21 January 2018

Identifiers

DOI

10.1093/NAR/GKQ045

1 reference

27 July 2017

1 reference

27 July 2017

1 reference

PubMed ID

20172960