(Q33545203)

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The complete plastid genome sequence of the secondarily nonphotosynthetic alga Cryptomonas paramecium: reduction, compaction, and accelerated evolutionary rate

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scholarly article

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Europe PubMed Central

PubMed publication ID

27 July 2017

The complete plastid genome sequence of the secondarily nonphotosynthetic alga Cryptomonas paramecium: reduction, compaction, and accelerated evolutionary rate. (English)

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Stephanie A. Malfatti

4

object named as

Stephanie A Malfatti

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

John M Archibald

7

object named as

John M Archibald

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

author name string

Natalie Donaher

1

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Goro Tanifuji

2

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Naoko T Onodera

3

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Patrick S G Chain

5

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Yoshiaki Hara

6

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

publication date

13 November 2009

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Genome Biology and Evolution

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

1

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

439-448

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

The puzzle of plastid evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

A rapid bootstrap algorithm for the RAxML Web servers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Evolution of the apicoplast and its hosts: from heterotrophy to autotrophy and back again

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

From chloroplasts to "cryptic" plastids: evolution of plastid genomes in parasitic plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Diversification of unicellular eukaryotes: cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Complete sequence and analysis of the mitochondrial genome of Hemiselmis andersenii CCMP644 (Cryptophyceae)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Plastid evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

A photosynthetic alveolate closely related to apicomplexan parasites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

The origin and establishment of the plastid in algae and plants.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Retrotransposons and tandem repeat sequences in the nuclear genomes of cryptomonad algae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

The Complete Chloroplast Genome of the Chlorarachniophyte Bigelowiella natans: Evidence for Independent Origins of Chlorarachniophyte and Euglenid Secondary Endosymbionts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Apicoplast fatty acid synthesis is essential for organelle biogenesis and parasite survival in Toxoplasma gondii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Plastid-to-nucleus retrograde signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Why are plastid genomes retained in non-photosynthetic organisms?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Lineage-specific variations of congruent evolution among DNA sequences from three genomes, and relaxed selective constraints on rbcL in Cryptomonas (Cryptophyceae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

The Rhodomonas salina mitochondrial genome: bacteria-like operons, compact gene arrangement and complex repeat region

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Multiple metabolic roles for the nonphotosynthetic plastid of the green alga Prototheca wickerhamii.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

The apicoplast: a review of the derived plastid of apicomplexan parasites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Revision of the genus Cryptomonas (Cryptophyceae): a combination of molecular phylogeny and morphology provides insights into a long-hidden dimorphism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

The treasure trove of algal chloroplast genomes. Surprises in architecture and gene content, and their functional implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

The highly reduced genome of an enslaved algal nucleus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Chloroplast origin and integration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Artemis: sequence visualization and annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Gene-cluster analysis in chloroplast genomics

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

The plastid genome of the cryptophyte alga, Guillardia theta: complete sequence and conserved synteny groups confirm its common ancestry with red algae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Analyzing genomes with cumulative skew diagrams

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Complete sequence of Euglena gracilis chloroplast DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Cryptomonad algae are evolutionary chimaeras of two phylogenetically distinct unicellular eukaryotes

1 reference

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21 June 2018

The plastid genome of Cryptomonas phi encodes an hsp70-like protein, a histone-like protein, and an acyl carrier protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Demonstration of nucleomorph-encoded eukaryotic small subunit ribosomal RNA in cryptomonads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

21 June 2018

Nucleomorph genomes: structure, function, origin and evolution.

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVP047

21 January 2018

Multiple independent losses of photosynthesis and differing evolutionary rates in the genus Cryptomonas (Cryptophyceae): combined phylogenetic analyses of DNA sequences of the nuclear and the nucleomorph ribosomal operons.

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVP047

21 January 2018

Nuclear and nucleomorph SSU rDNA phylogeny in the Cryptophyta and the evolution of cryptophyte diversity

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVP047

21 January 2018

Novel nucleomorph genome architecture in the cryptomonad genus hemiselmis.

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVP047

21 January 2018

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Insight into the diversity and evolution of the cryptomonad nucleomorph genome.

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVP047

21 January 2018

Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage.

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVP047

21 January 2018

The complete plastid genome sequence of the haptophyte Emiliania huxleyi: a comparison to other plastid genomes.

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVP047

21 January 2018

Complete gene map of the plastid genome of the nonphotosynthetic euglenoid flagellate Astasia longa.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2839278

31 October 2018

Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVP047

21 January 2018

The genes encoding subunits of ATP synthase are conserved in the reduced plastid genome of the heterotrophic alga Prototheca wickerhamii

1 reference

https://pubmed.ncbi.nlm.nih.gov/20333213

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MOLECULAR PHYLOGENY OF PHYCOCYANIN-CONTAINING CRYPTOPHYTES: EVOLUTION OF BILIPROTEINS AND GEOGRAPHICAL DISTRIBUTION(1).

1 reference

https://pubmed.ncbi.nlm.nih.gov/20333213

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/GBE/EVP047

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

ResearchGate publication ID

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