(Q33552998)

28 July 2017

title

Functional selection and systematic analysis of intronic splicing elements identify active sequence motifs and associated splicing factors (English)

1 reference

28 July 2017

5

Christina D Smolke

1 reference

28 July 2017

Stephanie J Culler

1

1 reference

28 July 2017

Kevin G Hoff

series ordinal

2

1 reference

28 July 2017

Rodger B Voelker

series ordinal

3

1 reference

28 July 2017

J Andrew Berglund

series ordinal

4

1 reference

28 July 2017

language of work or name

English

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publication date

12 April 2010

1 reference

28 July 2017

published in

Nucleic Acids Research

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28 July 2017

volume

38

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28 July 2017

issue

15

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28 July 2017

page(s)

5152-5165

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Creative Commons Attribution-NonCommercial 2.5 Generic

28 July 2017

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells

14 July 2018

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

14 July 2018

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Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines

14 July 2018

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HITS-CLIP yields genome-wide insights into brain alternative RNA processing

14 July 2018

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Alternative isoform regulation in human tissue transcriptomes

14 July 2018

1 reference

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Identification of motifs that function in the splicing of non-canonical introns

14 July 2018

1 reference

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Splicing regulation: from a parts list of regulatory elements to an integrated splicing code

14 July 2018

1 reference

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Alternative splicing events identified in human embryonic stem cells and neural progenitors

14 July 2018

1 reference

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Splicing in disease: disruption of the splicing code and the decoding machinery

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Downstream intronic splicing enhancers

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Discovery and analysis of evolutionarily conserved intronic splicing regulatory elements

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Interaction of muscleblind, CUG-BP1 and hnRNP H proteins in DM1-associated aberrant IR splicing

14 July 2018

1 reference

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CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding

14 July 2018

1 reference

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Alternative splicing: new insights from global analyses

14 July 2018

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General and specific functions of exonic splicing silencers in splicing control

14 July 2018

1 reference

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Determinants of exon 7 splicing in the spinal muscular atrophy genes, SMN1 and SMN2.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Exon inclusion is dependent on predictable exonic splicing enhancers

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Understanding alternative splicing: towards a cellular code

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Dichotomous splicing signals in exon flanks

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Systematic identification and analysis of exonic splicing silencers.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Variation in sequence and organization of splicing regulatory elements in vertebrate genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Computational definition of sequence motifs governing constitutive exon splicing.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

HnRNP G and Tra2beta: opposite effects on splicing matched by antagonism in RNA binding

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Mechanisms of alternative pre-messenger RNA splicing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Finding signals that regulate alternative splicing in the post-genomic era

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Predictive identification of exonic splicing enhancers in human genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Disruption of an SF2/ASF-dependent exonic splicing enhancer in SMN2 causes spinal muscular atrophy in the absence of SMN1.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

An efficient algorithm for large-scale detection of protein families

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Alternative pre-mRNA splicing: the logic of combinatorial control

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Binding of hnRNP H to an exonic splicing silencer is involved in the regulation of alternative splicing of the rat beta-tropomyosin gene

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

A perfect message: RNA surveillance and nonsense-mediated decay

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Multiple distinct splicing enhancers in the protein-coding sequences of a constitutively spliced pre-mRNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Regulated tissue-specific expression of antagonistic pre-mRNA splicing factors.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Exportin 1 (Crm1p) is an essential nuclear export factor

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Mutation of PTB binding sites causes misregulation of alternative 3' splice site selection in vivo

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Identification of a new class of exonic splicing enhancers by in vivo selection

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Widespread predicted nonsense-mediated mRNA decay of alternatively-spliced transcripts of human normal and disease genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Strong RNA splicing enhancers identified by a modified method of cycled selection interact with SR protein.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2926609

Dynamic antagonism between ETR-3 and PTB regulates cell type-specific alternative splicing

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20385591

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ248

1 reference

28 July 2017

1 reference

28 July 2017

1 reference