(Q33561494)

28 July 2017

Macromolecular crowding as a regulator of gene transcription (English)

1 reference

28 July 2017

1 reference

Igal Szleifer

4

0 references

Vadim Backman

series ordinal

3

object named as

Vadim Backman

1 reference

28 July 2017

Hiroaki Matsuda

1

1 reference

PubMed ID

24739179

28 July 2017

Gregory Garbès Putzel

series ordinal

2

1 reference

PubMed ID

24739179

28 July 2017

language of work or name

English

0 references

publication date

1 April 2014

1 reference

28 July 2017

10

1 reference

inferred from page(s)

published in

Biophysical Journal

1 reference

28 July 2017

106

1 reference

28 July 2017

1801-1810

1 reference

28 July 2017

8

1 reference

Molecular crowding shapes gene expression in synthetic cellular nanosystems

28 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Eukaryotic transcriptional dynamics: from single molecules to cell populations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

A method for computing association rate constants of atomistically represented proteins under macromolecular crowding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Consequences of mRNA transport on stochastic variability in protein levels.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Effects of macromolecular crowding on genetic networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Cell-free protein expression under macromolecular crowding conditions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Physical limits of cells and proteomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Quantitative dissection of the simple repression input-output function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Non-specific (entropic) forces as major determinants of the structure of mammalian chromosomes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Role of cytoskeleton in controlling the disorder strength of cellular nanoscale architecture

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Atomistic modeling of macromolecular crowding predicts modest increases in protein folding and binding stability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Effect of macromolecular crowding on reaction rates: a computational and theoretical study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Optical methodology for detecting histologically unapparent nanoscale consequences of genetic alterations in biological cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

The degree of macromolecular crowding in the cytoplasm and nucleoplasm of mammalian cells is conserved

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Experimental evidence for the influence of molecular crowding on nuclear architecture

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

The depletion attraction: an underappreciated force driving cellular organization.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Transcriptional regulation by the numbers: models.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Reaction kinetics in intracellular environments with macromolecular crowding: simulations and rate laws

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Addressing protein localization within the nucleus.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Macromolecular crowding: an important but neglected aspect of the intracellular environment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

VMD: visual molecular dynamics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Anomalous diffusion due to obstacles: a Monte Carlo study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

The effect of volume occupancy upon the thermodynamic activity of proteins: some biochemical consequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Confinement as a determinant of macromolecular structure and reactivity.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Optimal cytoplasmatic density and flux balance model under macromolecular crowding effects.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4008821

Depletion effects and loop formation in self-avoiding polymers

31 October 2018

1 reference

12 December 2020

Macromolecular crowding effects on protein–protein binding affinity and specificity

1 reference

12 December 2020

Crowding effects on protein association: effect of interactions between crowding agents

1 reference

12 December 2020

Crowding-induced structural alterations of random-loop chromosome model

1 reference

12 December 2020

10.1016/J.BPJ.2014.02.019

Identifiers

DOI

1 reference

28 July 2017

1 reference

28 July 2017

1 reference

PubMed ID

24739179