(Q35518312)

8 August 2017

title

Physical limits of cells and proteomes (English)

1 reference

8 August 2017

1

Ken A Dill

1 reference

8 August 2017

Kingshuk Ghosh

2

1 reference

8 August 2017

Jeremy D Schmit

series ordinal

3

1 reference

8 August 2017

language of work or name

English

0 references

publication date

17 October 2011

1 reference

8 August 2017

number of pages

7

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

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8 August 2017

volume

108

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8 August 2017

issue

44

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8 August 2017

page(s)

17876-17882

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How do thermophilic proteins and proteomes withstand high temperature?

8 August 2017

cites work

1 reference

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Cellular proteomes have broad distributions of protein stability

12 July 2018

1 reference

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Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion

12 July 2018

1 reference

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Thermal adaptation of viruses and bacteria

12 July 2018

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Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm

12 July 2018

1 reference

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Theoretical perspectives on protein folding

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Computing protein stabilities from their chain lengths

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Cytoplasmic diffusion: molecular motors mix it up

12 July 2018

1 reference

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Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

12 July 2018

1 reference

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Predicting protein folding rates from geometric contact and amino acid sequence

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Adapting proteostasis for disease intervention

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Protein stability imposes limits on organism complexity and speed of molecular evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Increasing protein conformational stability by optimizing beta-turn sequence

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Conformational entropy of alanine versus glycine in protein denatured states

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Hyperthermic biology and cancer therapies: a hypothesis for the "Lance Armstrong effect".

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Kinetic effects of temperature on rates of genetic divergence and speciation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Entropic stabilization of proteins and its proteomic consequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Why highly expressed proteins evolve slowly

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Monitoring protein stability and aggregation in vivo by real-time fluorescent labeling

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Protein folding and misfolding

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Contact order revisited: influence of protein size on the folding rate

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Electrostatic contributions to the stability of a thermophilic cold shock protein

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

The relationship of protein conservation and sequence length

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Protein Structure and the Energetics of Protein Stability.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Macromolecular crowding: obvious but underappreciated

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Quantitative protein stability measurement in vivo

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

The effects of disulfide bonds on the denatured state of barnase

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Cooler winters as a possible cause of mass extinctions at the Eocene/Oligocene boundary.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Electrostatic strengths of salt bridges in thermophilic and mesophilic glutamate dehydrogenase monomers.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Three-dimensional direct imaging of structural relaxation near the colloidal glass transition

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

The stability of salt bridges at high temperatures: implications for hyperthermophilic proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Contact order, transition state placement and the refolding rates of single domain proteins.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Temperature of egg incubation determines sex in Alligator mississippiensis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

How crowded is the cytoplasm?

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Variation in Sensitivity to Heat Shock during the Cell-cycle of Chinese Hamster Cellsin Vitro

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Polypeptide-chain-elongation rate in Escherichia coli B/r as a function of growth rate

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Lattice model of diffusion-limited bimolecular chemical reactions in confined environments.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Salt bridges in the hyperthermophilic protein Ssh10b are resilient to temperature increases

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Prediction of diffusion coefficients of proteins

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Electrostatic interactions contribute to reduced heat capacity change of unfolding in a thermophilic ribosomal protein l30e.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Scaling of folding times with protein size

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

An electrostatic basis for the stability of thermophilic proteins

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Thermodynamics and kinetics of non-native interactions in protein folding: a single point mutant significantly stabilizes the N-terminal domain of L9 by modulating non-native interactions in the denatured state

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Evidence for cysteine clustering in thermophilic proteomes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Highly expressed genes in yeast evolve slowly.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Charge-charge interactions influence the denatured state ensemble and contribute to protein stability

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Factors enhancing protein thermostability

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3207669

Abrupt deep-sea warming, palaeoceanographic changes and benthic extinctions at the end of the Palaeocene

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1114477108

Effects of Incubation Temperature on Crocodiles and the Evolution of Reptilian Oviparity

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1114477108

Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1114477108

Protein-length distributions for the three domains of life

21 January 2018

1 reference

12 December 2020

Rate of protein folding near the point of thermodynamic equilibrium between the coil and the most stable chain fold

1 reference

12 December 2020

Oncogenic ras results in increased cell kill due to defective thermoprotection in lung cancer cells

1 reference

12 December 2020

Measurement of protein stability and protein denaturation in cells using differential scanning calorimetry

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1114477108

1 reference

8 August 2017

0 references

1 reference

8 August 2017

1 reference