(Q33563402)

28 July 2017

Mining metagenomic data for novel domains: BACON, a new carbohydrate-binding module (English)

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28 July 2017

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Daniel J Rigden

3

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author name string

Luciane V Mello

series ordinal

1

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PubMed ID

20416301

28 July 2017

Xin Chen

series ordinal

2

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PubMed ID

20416301

28 July 2017

language of work or name

English

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publication date

21 April 2010

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28 July 2017

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28 July 2017

584

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28 July 2017

11

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28 July 2017

2421-2426

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Nature of the protein universe

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Pfam 10 years on: 10,000 families and still growing

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Missing in action: enzyme functional annotations in biological databases

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The histidine phosphatase superfamily: structure and function

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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Isolation and partial characterization of novel genes encoding acidic cellulases from metagenomes of buffalo rumens

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Database resources of the National Center for Biotechnology Information

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

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Jalview Version 2--a multiple sequence alignment editor and analysis workbench

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2010.04.045

The HHpred interactive server for protein homology detection and structure prediction

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1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2010.04.045

CDD: a conserved domain database for interactive domain family analysis

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2010.04.045

The Pfam protein families database

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Prediction of lipoprotein signal peptides in Gram-negative bacteria

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Locating proteins in the cell using TargetP, SignalP and related tools

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Prediction of twin-arginine signal peptides

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

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MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences

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Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora.

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Construction, analysis, and beta-glucanase screening of a bacterial artificial chromosome library from the large-bowel microbiota of mice

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1 reference

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Analysis of catalytic residues in enzyme active sites

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1 reference

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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

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A novel domain in AMP-activated protein kinase causes glycogen storage bodies similar to those seen in hereditary cardiac arrhythmias.

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The PA14 domain, a conserved all-beta domain in bacterial toxins, enzymes, adhesins and signaling molecules

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Discoidin, a developmentally regulated carbohydrate-binding protein from Dictyostelium discoideum. Purification and characterization.

21 January 2018

1 reference

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The human microbiome project

21 January 2018

1 reference

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Importance of glycans to the host-bacteroides mutualism in the mammalian intestine

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1 reference

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Glycan foraging in vivo by an intestine-adapted bacterial symbiont

21 January 2018

1 reference

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A Genomic View of the Human-Bacteroides thetaiotaomicron Symbiosis

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1 reference

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Host-bacterial mutualism in the human intestine

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1 reference

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Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium.

21 January 2018

1 reference

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An intestinal mucin is the target substrate for a baculovirus enhancin

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2010.04.045

Sequence and structural features of carbohydrate binding in proteins and assessment of predictability using a neural network

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2010.04.045

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2010.04.045

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

21 January 2018

1 reference

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Ab initio modeling of small proteins by iterative TASSER simulations

21 January 2018

1 reference

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I-TASSER server for protein 3D structure prediction

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1 reference

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Genome-based identification and characterization of a putative mucin-binding protein from the surface of Streptococcus pneumoniae.

21 January 2018

1 reference

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Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein

21 January 2018

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Obesity alters gut microbial ecology

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An obesity-associated gut microbiome with increased capacity for energy harvest

21 January 2018

1 reference

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The microbiome and obesity: is obesity linked to our gut flora?

21 January 2018

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The Jpred 3 secondary structure prediction server

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2010.04.045

10.1016/J.FEBSLET.2010.04.045

21 January 2018

Identifiers

DOI

1 reference

28 July 2017

1 reference

PubMed ID

20416301