(Q33569251)

28 July 2017

title

High-resolution profiling of NMD targets in yeast reveals translational fidelity as a basis for substrate selection (English)

1 reference

28 July 2017

0 references

Alper Celik

1

1 reference

28 July 2017

Richard Baker

series ordinal

2

1 reference

28 July 2017

Feng He

series ordinal

3

1 reference

28 July 2017

Allan Jacobson

series ordinal

4

1 reference

28 July 2017

language of work or name

English

0 references

publication date

16 February 2017

1 reference

28 July 2017

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28 July 2017

volume

23

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28 July 2017

issue

5

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28 July 2017

page(s)

735-748

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describes a project that uses

28 July 2017

1 reference

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=5393182

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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NMD: a multifaceted response to premature translational termination

28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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N- and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD

28 July 2018

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28 July 2018

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Drosophila Upf1 and Upf2 loss of function inhibits cell growth and causes animal death in a Upf3-independent manner

28 July 2018

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Upf1 ATPase-dependent mRNP disassembly is required for completion of nonsense- mediated mRNA decay

28 July 2018

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28 July 2018

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Nonsense-mediated mRNA decapping occurs on polyribosomes in Saccharomyces cerevisiae

28 July 2018

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28 July 2018

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28 July 2018

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Long 3'-UTRs target wild-type mRNAs for nonsense-mediated mRNA decay in Saccharomyces cerevisiae.

28 July 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

28 July 2018

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28 July 2018

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Bidirectional promoters generate pervasive transcription in yeast

28 July 2018

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SMD and NMD are competitive pathways that contribute to myogenesis: effects on PAX3 and myogenin mRNAs

28 July 2018

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SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells

28 July 2018

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SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Widespread impact of nonsense-mediated mRNA decay on the yeast intronome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Alternative splicing resulting in nonsense-mediated mRNA decay: what is the meaning of nonsense?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

NMD is essential for hematopoietic stem and progenitor cells and for eliminating by-products of programmed DNA rearrangements

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

The transcriptional landscape of the yeast genome defined by RNA sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Upf1 phosphorylation triggers translational repression during nonsense-mediated mRNA decay

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

The EJC factor eIF4AIII modulates synaptic strength and neuronal protein expression

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Functions of the nonsense-mediated mRNA decay pathway in Drosophila development

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Ribosome occupancy of the yeast CPA1 upstream open reading frame termination codon modulates nonsense-mediated mRNA decay

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Concerted action of poly(A) nucleases and decapping enzyme in mammalian mRNA turnover

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Nonsense-containing mRNAs that accumulate in the absence of a functional nonsense-mediated mRNA decay pathway are destabilized rapidly upon its restitution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Recognition of yeast mRNAs as "nonsense containing" leads to both inhibition of mRNA translation and mRNA degradation: implications for the control of mRNA decapping

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Yeast Upf proteins required for RNA surveillance affect global expression of the yeast transcriptome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Nonsense surveillance in lymphocytes?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Polysome-associated mRNAs are substrates for the nonsense-mediated mRNA decay pathway in Saccharomyces cerevisiae

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Upf1p, Nmd2p, and Upf3p are interacting components of the yeast nonsense-mediated mRNA decay pathway

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Stabilization and ribosome association of unspliced pre-mRNAs in a yeast upf1- mutant

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

Premature translational termination triggers mRNA decapping

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5393182

mRNA quality control: an ancient machinery recognizes and degrades mRNAs with nonsense codons.

28 July 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

3' UTR length and messenger ribonucleoprotein composition determine endocleavage efficiencies at termination codons.

21 January 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

Translational competence of ribosomes released from a premature termination codon is modulated by NMD factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screen

21 January 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

Upf1p, Nmd2p, and Upf3p regulate the decapping and exonucleolytic degradation of both nonsense-containing mRNAs and wild-type mRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

Association of yeast Upf1p with direct substrates of the NMD pathway.

21 January 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

The SMG5-SMG7 heterodimer directly recruits the CCR4-NOT deadenylase complex to mRNAs containing nonsense codons via interaction with POP2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

Extensive transcriptional heterogeneity revealed by isoform profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

Dectin-1 is an extracellular pathogen sensor for the induction and processing of IL-1β via a noncanonical caspase-8 inflammasome

21 January 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

Cytoplasmic decay of intergenic transcripts in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

SMG7 acts as a molecular link between mRNA surveillance and mRNA decay

21 January 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

Nonsense-mediated mRNA decay effectors are essential for zebrafish embryonic development and survival

21 January 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

Translational control of intron splicing in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1261%2FRNA.060541.116

mRNA destabilization triggered by premature translational termination depends on at least three cis-acting sequence elements and one trans-acting factor

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28209632

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

mRNA surveillance by the Caenorhabditis elegans smg genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28209632

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1261/RNA.060541.116

1 reference

28 July 2017

1 reference

28 July 2017

1 reference