(Q33580167)

28 July 2017

title

Cost-effective sequencing of full-length cDNA clones powered by a de novo-reference hybrid assembly (English)

1 reference

28 July 2017

Masahiro Kasahara

6

0 references

Sumio Sugano

series ordinal

3

object named as

Sumio Sugano

1 reference

28 July 2017

5

Yutaka Suzuki

1 reference

28 July 2017

4

Shinichi Morishita

1 reference

28 July 2017

2

Junichi Watanabe

1 reference

28 July 2017

Reginaldo M Kuroshu

1

1 reference

28 July 2017

language of work or name

English

0 references

publication date

7 May 2010

1 reference

28 July 2017

1 reference

28 July 2017

volume

5

1 reference

28 July 2017

issue

5

1 reference

28 July 2017

page(s)

e10517

1 reference

Creative Commons Attribution 4.0 International

28 July 2017

copyright license

start time

7 May 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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21 June 2018

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Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes

21 June 2018

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21 June 2018

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SNP detection for massively parallel whole-genome resequencing

21 June 2018

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TopHat: discovering splice junctions with RNA-Seq

21 June 2018

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Annotating genomes with massive-scale RNA sequencing

21 June 2018

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RNA-Seq: a revolutionary tool for transcriptomics

21 June 2018

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

21 June 2018

1 reference

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Applications of next-generation sequencing technologies in functional genomics

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Isoform discovery by targeted cloning, 'deep-well' pooling and parallel sequencing.

21 June 2018

1 reference

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

21 June 2018

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The new paradigm of flow cell sequencing.

21 June 2018

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Stem cell transcriptome profiling via massive-scale mRNA sequencing

21 June 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 June 2018

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Efficient targeted transcript discovery via array-based normalization of RACE libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

21 June 2018

1 reference

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The transcriptional landscape of the yeast genome defined by RNA sequencing

21 June 2018

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Highly integrated single-base resolution maps of the epigenome in Arabidopsis

21 June 2018

1 reference

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 June 2018

1 reference

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ALLPATHS: de novo assembly of whole-genome shotgun microreads

21 June 2018

1 reference

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De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

ToxoDB: an integrated Toxoplasma gondii database resource

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

The medaka draft genome and insights into vertebrate genome evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Genome sequence, comparative analysis and haplotype structure of the domestic dog

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Finishing the euchromatic sequence of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Complete sequencing and characterization of 21,243 full-length human cDNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Initial sequencing and comparative analysis of the mouse genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

BLAT—The BLAST-Like Alignment Tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Initial sequencing and analysis of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Functional annotation of a full-length mouse cDNA collection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Large-scale concatenation cDNA sequencing

21 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

21 June 2018

https://pubmed.ncbi.nlm.nih.gov/20479877

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Simultaneous shotgun sequencing of multiple cDNA clones

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

DNA sequencing with chain-terminating inhibitors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Extending assembly of short DNA sequences to handle error.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Assembling millions of short DNA sequences using SSAKE.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Comparative genome assembly.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2866332

Is sequencing enlightenment ending the dark age of the transcriptome?

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20479877

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0010517

1 reference

28 July 2017

0 references

1 reference

28 July 2017

1 reference