(Q33589286)

English

A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block

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scholarly article

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Europe PubMed Central

PubMed publication ID

28 July 2017

A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block (English)

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

1 reference

based on heuristic

inferred from title

Catherine Feuillet

7

object named as

Catherine Feuillet

0 references

6

object named as

Etienne Paux

0 references

2

object named as

Thomas Wicker

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

object named as

James Breen

1

0 references

object named as

Wujun Ma

5

0 references

Matthew I Bellgard

object named as

Matthew Bellgard

9

0 references

8

object named as

Rudi Appels

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

author name string

Xiuying Kong

3

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Juncheng Zhang

4

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

publication date

27 May 2010

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

BMC Plant Biology

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

10

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

98

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Chromodomains and LTR retrotransposons in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

The Sorghum bicolor genome and the diversification of grasses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

A physical map of the 1-gigabase bread wheat chromosome 3B.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Multiple sequence alignment using ClustalW and ClustalX

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Recurrent rearrangements of chromosome 1q21.1 and variable pediatric phenotypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Wheat genomics: present status and future prospects.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Paramutation: epigenetic instructions passed across generations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Chromodomains direct integration of retrotransposons to heterochromatin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

The Pfam protein families database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

The Gypsy Database (GyDB) of mobile genetic elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Genome plasticity a key factor in the success of polyploid wheat under domestication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Distinct pathways for snoRNA and mRNA termination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

The TIGR Rice Genome Annotation Resource: improvements and new features

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

CDD: a conserved domain database for interactive domain family analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

A distinct small RNA pathway silences selfish genetic elements in the germline

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Molecular characterization of a diagnostic DNA marker for domesticated tetraploid wheat provides evidence for gene flow from wild tetraploid wheat to hexaploid wheat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Molecular and functional diversity of maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Analysis and mapping of randomly chosen bacterial artificial chromosome clones from hexaploid bread wheat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Plant genomes: massive changes of the maize genome are caused by Helitrons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

The map-based sequence of the rice genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

InterProScan: protein domains identifier

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

ACT: the Artemis Comparison Tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Gene movement by Helitron transposons contributes to the haplotype variability of maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Comparative sequence analysis of the region harboring the hardness locus in barley and its colinear region in rice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Computational identification and characterization of novel genes from legumes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Mauve: multiple alignment of conserved genomic sequence with rearrangements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Comparative DNA sequence analysis of wheat and rice genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

RNA interference is required for normal centromere function in fission yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Positional cloning of the wheat vernalization gene VRN1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Advances in cereal functional genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Evolution of function in protein superfamilies, from a structural perspective.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Saturation mapping of a gene-rich recombination hot spot region in wheat.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

High gene density is conserved at syntenic loci of small and large grass genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Colinearity and its exceptions in orthologous adh regions of maize and sorghum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Profile hidden Markov models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Base-calling of automated sequencer traces using phred. II. Error probabilities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Prediction of complete gene structures in human genomic DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Identification and high-density mapping of gene-rich regions in chromosome group 1 of wheat.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Nested retrotransposons in the intergenic regions of the maize genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Heterochromatin and gene regulation in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

The Polycomb protein shares a homologous domain with a heterochromatin-associated protein of Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

21 June 2018

Novel clades of chromodomain-containing Gypsy LTR retrotransposons from mosses (Bryophyta).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

31 October 2018

Small cysteine-rich peptides resembling antimicrobial peptides have been under-predicted in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

31 October 2018

Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

31 October 2018

Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

31 October 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

31 October 2018

Pack-MULE transposable elements mediate gene evolution in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

31 October 2018

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

31 October 2018

Sequencing of the Triticum monococcum hardness locus reveals good microcolinearity with rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

31 October 2018

Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

31 October 2018

In silico comparative analysis reveals a mosaic conservation of genes within a novel colinear region in wheat chromosome 1AS and rice chromosome 5S.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

31 October 2018

Analysis of 106 kb of contiguous DNA sequence from the D genome of wheat reveals high gene density and a complex arrangement of genes related to disease resistance.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

31 October 2018

Numerous small rearrangements of gene content, order and orientation differentiate grass genomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

31 October 2018

Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

31 October 2018

Comparative sequence analysis of colinear barley and rice bacterial artificial chromosomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017796

31 October 2018

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31 October 2018

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31 October 2018

CACTA transposons in Triticeae. A diverse family of high-copy repetitive elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/20507561

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary History of the Grasses

1 reference

https://pubmed.ncbi.nlm.nih.gov/20507561

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Contrasted microcolinearity and gene evolution within a homoeologous region of wheat and barley species

1 reference

https://pubmed.ncbi.nlm.nih.gov/20507561

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural variation and evolution of a defense-gene cluster in natural populations of Aegilops tauschii

1 reference

https://pubmed.ncbi.nlm.nih.gov/20507561

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5A(m)

1 reference

https://pubmed.ncbi.nlm.nih.gov/20507561

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular characterization of a set of wheat deletion stocks for use in chromosome bin mapping of ESTs

1 reference

https://pubmed.ncbi.nlm.nih.gov/20507561

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative organization of wheat homoeologous group 3S and 7L using wheat-rice synteny and identification of potential markers for genes controlling xanthophyll content in wheat

1 reference

https://pubmed.ncbi.nlm.nih.gov/20507561

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q

1 reference

https://pubmed.ncbi.nlm.nih.gov/20507561

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2229-10-98

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

ResearchGate publication ID

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