(Q33595512)

28 July 2017

A Monte Carlo approach successfully identifies randomness in multiple sequence alignments: a more objective means of data exclusion (English)

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28 July 2017

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1

Bernhard Misof

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28 July 2017

Katharina Misof

2

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28 July 2017

1 February 2009

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28 July 2017

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28 July 2017

58

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28 July 2017

21-34

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28 July 2017

1

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A statistical score for assessing the quality of multiple sequence alignments

28 July 2017

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Split decomposition: a new and useful approach to phylogenetic analysis of distance data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Combining many multiple alignments in one improved alignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Evolution of nuclear ribosomal RNAs in kinetoplastid protozoa: perspectives on the age and origins of parasitism

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Alignment-ambiguous nucleotide sites and the exclusion of systematic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

In silico sequence evolution with site-specific interactions along phylogenetic trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Characterizing regions of ambiguous alignment caused by the expansion and contraction of hairpin-stem loops in ribosomal RNA molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

MRBAYES: Bayesian inference of phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Application of phylogenetic networks in evolutionary studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Phylogenomics: the beginning of incongruence?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Phylogeny of Trichoptera (caddisflies): characterization of signal and noise within multiple datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Opinions on multiple sequence alignment, and an empirical comparison of repeatability and accuracy between POY and structural alignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Quality assessment of multiple alignment programs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Kalign--an accurate and fast multiple sequence alignment algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Automatic assessment of alignment quality

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

SOAP, cleaning multiple alignments from unstable blocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Ecdysozoan phylogeny and Bayesian inference: first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Multiple DNA and protein sequence alignment based on segment-to-segment comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Recent progress in multiple sequence alignment: a survey

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

T-Coffee: A novel method for fast and accurate multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Multiple sequence alignment in phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Joint Bayesian Estimation of Alignment and Phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Acoel Flatworms: Earliest Extant Bilaterian Metazoans, Not Members of Platyhelminthes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Biases in phylogenetic estimation can be caused by random sequence segments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

A comprehensive comparison of multiple sequence alignment programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

RASCAL: rapid scanning and correction of multiple sequence alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Sequence alignment and penalty choice. Review of concepts, case studies and implications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Elision: a method for accommodating multiple molecular sequence alignments with alignment-ambiguous sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP006

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYP006

1 reference

28 July 2017

1 reference

PubMed ID

20525566