(Q33607569)

28 July 2017

title

Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays (English)

1 reference

28 July 2017

author

Dominique Stoppa-Lyonnet

3

object named as

Dominique Stoppa-Lyonnet

0 references

Emmanuel Barillot

5

object named as

Emmanuel Barillot

1 reference

28 July 2017

Tatiana Popova

1

1 reference

28 July 2017

Elodie Manié

2

1 reference

28 July 2017

Guillem Rigaill

4

1 reference

28 July 2017

Marc Henri Stern

6

1 reference

28 July 2017

publication date

11 November 2009

1 reference

28 July 2017

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28 July 2017

volume

10

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28 July 2017

issue

11

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28 July 2017

page(s)

R128

1 reference

https://scigraph.springernature.com/pub.10.1186/gb-2009-10-11-r128

28 July 2017

exact match

0 references

cites work

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High frequency of TP53 mutation in BRCA1 and sporadic basal-like carcinomas but not in BRCA1 luminal breast tumors

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Genomic copy number determination in cancer cells from single nucleotide polymorphism microarrays based on quantitative genotyping corrected for aneuploidy.

21 June 2018

1 reference

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Ploidy status and copy number aberrations in primary glioblastomas defined by integrated analysis of allelic ratios, signal ratios and loss of heterozygosity using 500K SNP Mapping Arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810663

Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios

21 June 2018

1 reference

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Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810663

Systematic assessment of copy number variant detection via genome-wide SNP genotyping

21 June 2018

1 reference

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Major copy proportion analysis of tumor samples using SNP arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810663

SNP arrays in heterogeneous tissue: highly accurate collection of both germline and somatic genetic information from unpaired single tumor samples.

21 June 2018

1 reference

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Estimation and assessment of raw copy numbers at the single locus level

21 June 2018

1 reference

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A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays

21 June 2018

1 reference

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SiDCoN: a tool to aid scoring of DNA copy number changes in SNP chip data

21 June 2018

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PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data

21 June 2018

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Gene expression profiling and histopathological characterization of triple-negative/basal-like breast carcinomas

21 June 2018

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X inactive-specific transcript RNA coating and genetic instability of the X chromosome in BRCA1 breast tumors

21 June 2018

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Identification of typical medullary breast carcinoma as a genomic sub-group of basal-like carcinomas, a heterogeneous new molecular entity

21 June 2018

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Molecular definition of breast tumor heterogeneity

21 June 2018

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High-resolution copy number analysis of paraffin-embedded archival tissue using SNP BeadArrays.

21 June 2018

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A faster circular binary segmentation algorithm for the analysis of array CGH data

21 June 2018

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Genomic and transcriptional aberrations linked to breast cancer pathophysiologies

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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CARAT: a novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810663

A statistical approach for array CGH data analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810663

Analysis of array CGH data: from signal ratio to gain and loss of DNA regions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810663

Germline BRCA1 mutations and a basal epithelial phenotype in breast cancer

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810663

Chromosome aberrations in solid tumors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810663

Smoothing waves in array CGH tumor profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810663

ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810663

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30 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810663

Highly recurrent der(1;16)(q10;p10) and other 16q arm alterations in lobular breast cancer

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19903341

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2009-10-11-R128

1 reference

Dimensions Publication ID

28 July 2017

0 references

1 reference

28 July 2017

1 reference