(Q33609561)

28 July 2017

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L (English)

1 reference

28 July 2017

1 reference

1 reference

42

Jaroslav Doležel

0 references

Hana Šimková

14

Hana Šimková

0 references

Jan Vrána

16

Jan Vrána

0 references

Rachid Ounit

Rachid Ounit

19

0 references

Stefano Grasso

Stefano Grasso

23

0 references

Sebastian Beier

Sebastian Beier

1

0 references

Cong Tan

Cong Tan

35

0 references

Martin Mascher

Martin Mascher

60

0 references

Thomas Schmutzer

Thomas Schmutzer

21

0 references

Micha Bayer

Micha Bayer

8

0 references

Marco Groth

Marco Groth

11

0 references

Axel Himmelbach

Axel Himmelbach

2

0 references

Paul J. Kersey

Paul Kersey

47

0 references

Uwe Scholz

Uwe Scholz

58

0 references

Andreas Houben

Andreas Houben

41

0 references

Alan H. Schulman

Alan H Schulman

50

0 references

Nils Stein

Nils Stein

59

0 references

Peter Langridge

Peter Langridge

45

0 references

Matthew I Bellgard

Matthew I Bellgard

40

0 references

Matthias Platzer

51

Matthias Platzer

1 reference

28 July 2017

57

Robbie Waugh

1 reference

28 July 2017

56

Chengdao Li

1 reference

28 July 2017

46

Gary J Muehlbauer

1 reference

28 July 2017

54

Guoping Zhang

1 reference

28 July 2017

10

Stefan Taudien

1 reference

28 July 2017

39

Jesse A Poland

1 reference

28 July 2017

12

Marius Felder

1 reference

28 July 2017

26

Darren Heavens

1 reference

28 July 2017

6

Qisen Zhang

1 reference

28 July 2017

5

Roberto A Barrero

1 reference

28 July 2017

13

Alex Hastie

1 reference

28 July 2017

15

Helena Staňková

1 reference

28 July 2017

María Muñoz-Amatriaín

18

María Muñoz-Amatriaín

1 reference

28 July 2017

20

Steve Wanamaker

1 reference

28 July 2017

9

Daniel Bolser

1 reference

28 July 2017

3

Christian Colmsee

1 reference

28 July 2017

22

Lala Aliyeva-Schnorr

1 reference

28 July 2017

24

Jaakko Tanskanen

1 reference

28 July 2017

25

Dharanya Sampath

1 reference

28 July 2017

27

Sujie Cao

1 reference

28 July 2017

28

Brett Chapman

1 reference

28 July 2017

33

Chongyun Lin

1 reference

28 July 2017

34

John K McCooke

1 reference

28 July 2017

37

Shuya Yin

1 reference

28 July 2017

38

Gaofeng Zhou

1 reference

28 July 2017

43

Sarah Ayling

1 reference

28 July 2017

49

Mario Caccamo

1 reference

28 July 2017

52

Timothy J Close

1 reference

28 July 2017

55

Ilka Braumann

1 reference

28 July 2017

Xiao-Qi Zhang

4

1 reference

28 July 2017

Lin Li

7

1 reference

28 July 2017

Saki Chan

17

1 reference

28 July 2017

Fei Dai

29

1 reference

28 July 2017

Yong Han

30

1 reference

28 July 2017

Hua Li

31

1 reference

28 July 2017

Xuan Li

32

1 reference

28 July 2017

Songbo Wang

36

1 reference

28 July 2017

Stefano Lonardi

44

1 reference

28 July 2017

Matthew D Clark

48

1 reference

28 July 2017

Mats Hansson

53

1 reference

28 July 2017

27 April 2017

1 reference

28 July 2017

1 reference

28 July 2017

4

1 reference

28 July 2017

170044

1 reference

Creative Commons Attribution 4.0 International

28 July 2017

start time

27 April 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

MIRA

MIRA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1038/sdata.2017.44

0 references

cites work

PGP repository: a plant phenomics and genomics data publication infrastructure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Rapid detection of structural variation in a human genome using nanochannel-based genome mapping technology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Unlocking the secondary gene-pool of barley with next-generation sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

e!DAL--a framework to store, share and publish research data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Application of genotyping-by-sequencing on semiconductor sequencing platforms: a comparison of genetic and reference-based marker ordering in barley

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Combinatorial pooling enables selective sequencing of the barley gene space

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Analysis of the bread wheat genome using whole-genome shotgun sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

A physical, genetic and functional sequence assembly of the barley genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Paired-end sequencing of long-range DNA fragments for de novo assembly of large, complex Mammalian genomes by direct intra-molecule ligation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Genome architectures revealed by tethered chromosome conformation capture and population-based modeling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Sequencing of BAC pools by different next generation sequencing platforms and strategies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

FLASH: fast length adjustment of short reads to improve genome assemblies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

A framework for variation discovery and genotyping using next-generation DNA sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Scaffolding pre-assembled contigs using SSPACE

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Illumina sequencing library preparation for highly multiplexed target capture and sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

BEDTools: a flexible suite of utilities for comparing genomic features

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

The B73 Maize Genome: Complexity, Diversity, and Dynamics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

The Sequence Alignment/Map format and SAMtools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Fast and accurate short read alignment with Burrows-Wheeler transform

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

ABySS: a parallel assembler for short read sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

A large genome center's improvements to the Illumina sequencing system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Efficient and accurate construction of genetic linkage maps from the minimum spanning tree of a graph

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Parallel tagged sequencing on the 454 platform

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Automated generation of heuristics for biological sequence comparison

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Initial sequencing and analysis of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

A greedy algorithm for aligning DNA sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

The international barley sequencing consortium--at the threshold of efficient access to the barley genome.

21 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FSDATA.2017.44

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FSDATA.2017.44

BARLEX – the Barley Draft Genome Explorer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FSDATA.2017.44

The barley Frost resistance-H2 locus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FSDATA.2017.44

CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FSDATA.2017.44

Shortest Connection Networks And Some Generalizations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FSDATA.2017.44

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FSDATA.2017.44

Cytologically integrated physical restriction fragment length polymorphism maps for the barley genome based on translocation breakpoints

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5407242

Cytogenetic mapping with centromeric bacterial artificial chromosomes contigs shows that this recombination-poor region comprises more than half of barley chromosome 3H

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28448065

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A chromosome conformation capture ordered sequence of the barley genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28448065

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SDATA.2017.44

1 reference

Dimensions Publication ID

28 July 2017

0 references

1 reference

28 July 2017

1 reference