(Q37238362)

19 August 2017

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome (English)

1 reference

19 August 2017

1 reference

21

1 reference

19 August 2017

34

Jane Grimwood

1 reference

19 August 2017

Rachid Ounit

28

0 references

Lothar Altschmied

Lothar Altschmied

37

0 references

Francesca Cordero

Francesca Cordero

26

0 references

Marco Beccuti

Marco Beccuti

24

0 references

Roger Wise

Roger P Wise

11

0 references

Nils Stein

Nils Stein

12

0 references

Andreas Graner

Andreas Graner

44

0 references

Jan T Svensson

Jan T Svensson

5

0 references

Hana Šimková

32

Hana Simková

1 reference

19 August 2017

33

Jaroslav Dolezel

1 reference

19 August 2017

10

Gary J Muehlbauer

1 reference

19 August 2017

17

Shiaoman Chao

1 reference

19 August 2017

40

Laurel Cooper

1 reference

19 August 2017

35

Jeremy Schmutz

1 reference

19 August 2017

María Muñoz-Amatriaín

1

María Muñoz-Amatriaín

1 reference

19 August 2017

7

Steve Wanamaker

1 reference

19 August 2017

49

Timothy J Close

1 reference

19 August 2017

18

Pascal Condamine

1 reference

19 August 2017

16

Prasanna R Bhat

1 reference

19 August 2017

30

Frank You

1 reference

19 August 2017

6

Matthew J Moscou

1 reference

19 August 2017

4

Kavitha Madishetty

1 reference

19 August 2017

20

Josh Resnik

1 reference

19 August 2017

36

Denisa Duma

1 reference

19 August 2017

23

Matthew Alpert

1 reference

19 August 2017

Stefano Lonardi

2

1 reference

19 August 2017

MingCheng Luo

3

1 reference

19 August 2017

Tao Jiang

8

1 reference

19 August 2017

Andris Kleinhofs

9

1 reference

19 August 2017

Yaqin Ma

13

1 reference

19 August 2017

Edmundo Rodriguez

14

1 reference

19 August 2017

Dave Kudrna

15

1 reference

19 August 2017

Shane Heinen

19

1 reference

19 August 2017

Heather N Witt

22

1 reference

19 August 2017

Serdar Bozdag

25

1 reference

19 August 2017

Hamid Mirebrahim

27

1 reference

19 August 2017

Yonghui Wu

29

1 reference

19 August 2017

Jie Zheng

31

1 reference

19 August 2017

Tom Blake

38

1 reference

19 August 2017

Phil Bregitzer

39

1 reference

19 August 2017

Muharrem Dilbirligi

41

1 reference

19 August 2017

Anders Falk

42

1 reference

19 August 2017

Leila Feiz

43

1 reference

19 August 2017

Perry Gustafson

45

1 reference

19 August 2017

Patrick M Hayes

46

1 reference

19 August 2017

Peggy Lemaux

47

1 reference

19 August 2017

Jafar Mammadov

48

1 reference

19 August 2017

7 August 2015

1 reference

19 August 2017

1 reference

19 August 2017

84

1 reference

19 August 2017

1

1 reference

19 August 2017

216-227

1 reference

When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality

19 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

The draft genome of Tibetan hulless barley reveals adaptive patterns to the high stressful Tibetan Plateau

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

The USDA barley core collection: genetic diversity, population structure, and potential for genome-wide association studies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Combinatorial pooling enables selective sequencing of the barley gene space

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Insular organization of gene space in grass genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

MIPS PlantsDB: a database framework for comparative plant genome research

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

A physical, genetic and functional sequence assembly of the barley genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Chromosomes in the flow to simplify genome analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Crop genomics: advances and applications

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

agriGO: a GO analysis toolkit for the agricultural community

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Development and implementation of high-throughput SNP genotyping in barley

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

A compartmentalized approach to the assembly of physical maps

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

The wheat and barley vernalization gene VRN3 is an orthologue of FT

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

GenoProfiler: batch processing of high-throughput capillary fingerprinting data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Dissection of the nuclear genome of barley by chromosome flow sorting

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

The map-based sequence of the rice genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Gene-containing regions of wheat and the other grass genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Sequence organization of barley centromeres

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Retrotransposon evolution in diverse plant genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 5S (1HS) of barley

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

High gene density is conserved at syntenic loci of small and large grass genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

The distribution of genes in the genomes of Gramineae.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

The gene coding for the major birch pollen allergen Betv1, is highly homologous to a pea disease resistance response gene

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

QUAST: quality assessment tool for genome assemblies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Contigs built with fingerprints, markers, and FPC V4.7.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

FPC: a system for building contigs from restriction fingerprinted clones.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Structural and functional partitioning of bread wheat chromosome 3B.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Arabidopsis kinetochore null2 is an upstream component for centromeric histone H3 variant cenH3 deposition at centromeres.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

A graph-theoretical approach to the selection of the minimum tiling path from a physical map.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Unlocking the barley genome by chromosomal and comparative genomics

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

The international barley sequencing consortium--at the threshold of efficient access to the barley genome.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

The evolution of CONSTANS-like gene families in barley, rice, and Arabidopsis

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Centromeric retroelements and satellites interact with maize kinetochore protein CENH3.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

Comparative sequence analysis of colinear barley and rice bacterial artificial chromosomes.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014227

A bacterial artificial chromosome library for barley ( Hordeum vulgare L.) and the identification of clones containing putative resistance genes

3 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1111%2FTPJ.12959

An Improved Consensus Linkage Map of Barley Based on Flow-Sorted Chromosomes and Single Nucleotide Polymorphism Markers

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1111%2FTPJ.12959

21 January 2018

Identifiers

DOI

10.1111/TPJ.12959

1 reference

19 August 2017

1 reference

19 August 2017

1 reference