(Q33611089)

28 July 2017

title

Genome-wide characterization of the biggest grass, bamboo, based on 10,608 putative full-length cDNA sequences (English)

1 reference

28 July 2017

Zhenhua Peng

1

1 reference

28 July 2017

Tingting Lu

2

1 reference

28 July 2017

Lubin Li

3

1 reference

28 July 2017

Xiaohui Liu

4

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28 July 2017

Zhimin Gao

5

1 reference

28 July 2017

Tao Hu

6

1 reference

28 July 2017

Xuewen Yang

7

1 reference

28 July 2017

Qi Feng

8

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28 July 2017

Jianping Guan

9

1 reference

28 July 2017

Qijun Weng

10

1 reference

28 July 2017

Danlin Fan

11

1 reference

28 July 2017

Chuanrang Zhu

12

1 reference

28 July 2017

Ying Lu

13

1 reference

28 July 2017

Bin Han

14

1 reference

28 July 2017

Zehui Jiang

15

1 reference

28 July 2017

publication date

18 June 2010

1 reference

28 July 2017

1 reference

28 July 2017

volume

10

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28 July 2017

page(s)

116

1 reference

describes a project that uses

28 July 2017

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC3017805

inferred from PubMed Central ID database lookup

cites work

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Molecular evolution of synonymous codon usage in Populus

21 June 2018

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Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library.

21 June 2018

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Large multi-gene phylogenetic trees of the grasses (Poaceae): progress towards complete tribal and generic level sampling

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Analysis of 142 genes resolves the rapid diversification of the rice genus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Genome size and sequence composition of moso bamboo: a comparative study

21 June 2018

1 reference

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21 June 2018

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Patterns in grass genome evolution

21 June 2018

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Rapid divergence of codon usage patterns within the rice genome

21 June 2018

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The molecular genetics of crop domestication

21 June 2018

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The TIGR Plant Transcript Assemblies database

21 June 2018

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Progress and challenges in studies of the evolution of development

21 June 2018

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Intron size, abundance, and distribution within untranslated regions of genes

21 June 2018

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Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species

21 June 2018

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PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

21 June 2018

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Genomewide comparative analysis of alternative splicing in plants

21 June 2018

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Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes

21 June 2018

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The map-based sequence of the rice genome

21 June 2018

1 reference

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Function of alternative splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Over 20% of human transcripts might form sense-antisense pairs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

The evolving roles of alternative splicing

21 June 2018

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The Pfam protein families database

21 June 2018

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A unique set of 11,008 onion expressed sequence tags reveals expressed sequence and genomic differences between the monocot orders Asparagales and Poales

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Functional annotation of a full-length Arabidopsis cDNA collection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

GC-content evolution in mammalian genomes: the biased gene conversion hypothesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

A novel hybrid open reading frame formed by multiple cellular gene transductions by a plant long terminal repeat retroelement

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

MRBAYES: Bayesian inference of phylogenetic trees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

EMBOSS: the European Molecular Biology Open Software Suite

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

CAP3: A DNA sequence assembly program

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Transcriptional regulators and the evolution of plant form.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Base-calling of automated sequencer traces using phred. II. Error probabilities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Comparative genetics in the grasses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Cell-wall carbohydrates and their modification as a resource for biofuels

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

A collection of 10,096 indica rice full-length cDNAs reveals highly expressed sequence divergence between Oryza sativa indica and japonica subspecies.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Evidence of selectively driven codon usage in rice: implications for GC content evolution of Gramineae genes.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

DNA sequence quality trimming and vector removal.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

Synergy of two reference genomes for the grass family

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3017805

30 October 2018

1 reference

12 December 2020

Evolutionary History of the Grasses

1 reference

12 December 2020

Poaceae genomes: going from unattainable to becoming a model clade for comparative plant genomics

1 reference

12 December 2020

Essential role of caffeoyl coenzyme A O-methyltransferase in lignin biosynthesis in woody poplar plants

1 reference

12 December 2020

Comparative genomics of grasses promises a bountiful harvest

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2229-10-116

1 reference

Dimensions Publication ID

28 July 2017

0 references

1 reference

28 July 2017

1 reference