(Q36678573)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18315873%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

title

Analysis of 142 genes resolves the rapid diversification of the rice genus (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18315873%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

6

1 reference

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3 January 2020

Jun Wang

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18315873%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

9

Song Ge

1 reference

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3 January 2020

author name string

Xin-Hui Zou

1

1 reference

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3 January 2020

Fu-Min Zhang

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18315873%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

Jian-Guo Zhang

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18315873%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

Li-Li Zang

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18315873%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

Liang Tang

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18315873%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

Tao Sang

8

1 reference

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3 January 2020

publication date

3 March 2008

1 reference

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3 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18315873%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

volume

9

1 reference

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3 January 2020

issue

3

1 reference

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3 January 2020

page(s)

R49

1 reference

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https://scigraph.springernature.com/pub.10.1186/gb-2008-9-3-r49

3 January 2020

exact match

0 references

cites work

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30 September 2017

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30 September 2017

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30 September 2017

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30 September 2017

1 reference

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Patterns in grass genome evolution

30 September 2017

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Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting

30 September 2017

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Bushes in the tree of life

30 September 2017

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Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects

30 September 2017

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The deepest divergences in land plants inferred from phylogenomic evidence

30 September 2017

1 reference

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Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

30 September 2017

1 reference

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Genetic evidence for complex speciation of humans and chimpanzees

30 September 2017

1 reference

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Phylogenomics: the beginning of incongruence?

30 September 2017

1 reference

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The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

30 September 2017

1 reference

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Application of phylogenetic networks in evolutionary studies

30 September 2017

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The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species

30 September 2017

1 reference

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How much data are needed to resolve a difficult phylogeny?: case study in Lamiales.

30 September 2017

1 reference

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The map-based sequence of the rice genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Genome-scale evidence of the nematode-arthropod clade

30 September 2017

1 reference

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Phylogenomics and the reconstruction of the tree of life

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

The Genomes of Oryza sativa: a history of duplications

30 September 2017

1 reference

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Multiple data sets, high homoplasy, and the phylogeny of softshell turtles (Testudines: Trionychidae).

30 September 2017

1 reference

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Comparative primate genomics

30 September 2017

1 reference

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Phylogenomics of eukaryotes: impact of missing data on large alignments

30 September 2017

1 reference

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Genome-scale phylogeny and the detection of systematic biases

30 September 2017

1 reference

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BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics

30 September 2017

1 reference

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Genome-scale approaches to resolving incongruence in molecular phylogenies

30 September 2017

1 reference

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MrBayes 3: Bayesian phylogenetic inference under mixed models

30 September 2017

1 reference

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Rice as a model for comparative genomics of plants

30 September 2017

1 reference

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Trees within trees: genes and species, molecules and morphology

30 September 2017

1 reference

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The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Archaeal phylogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees

30 September 2017

1 reference

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T-Coffee: A novel method for fast and accurate multiple sequence alignment

30 September 2017

1 reference

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Phylogeny of rice genomes with emphasis on origins of allotetraploid species

30 September 2017

1 reference

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The molecular evolution of terminal ear1, a regulatory gene in the genus Zea

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

MODELTEST: testing the model of DNA substitution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Age and rate of diversification of the Hawaiian silversword alliance (Compositae)

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Two new genomes in the Oryza complex identified on the basis of molecular divergence analysis using total genomic DNA hybridization

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Simple methods for testing the molecular evolutionary clock hypothesis.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Sampling properties of DNA sequence data in phylogenetic analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Relationships between gene trees and species trees

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Multilocus analysis of nucleotide variation and speciation in Oryza officinalis and its close relatives

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Improved consensus network techniques for genome-scale phylogeny

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Placing paleopolyploidy in relation to taxon divergence: a phylogenetic analysis in legumes using 39 gene families

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Spectronet: a package for computing spectra and median networks.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

The phylogenetic relationship of tetrapod, coelacanth, and lungfish revealed by the sequences of forty-four nuclear genes

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Sequence variation in the gene encoding the 10-kDa prolamin in Oryza (Poaceae). I. Phylogenetic Implications

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Phylogeny of Saxifragales (angiosperms, eudicots): analysis of a rapid, ancient radiation

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397501

Using Consensus Networks to Visualize Contradictory Evidence for Species Phylogeny

5 September 2018

1 reference

12 December 2020

Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes

1 reference

12 December 2020

Animal evolution and the molecular signature of radiations compressed in time

1 reference

12 December 2020

Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

1 reference

12 December 2020

Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochondrial, and nuclear genomes

1 reference

12 December 2020

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

12 December 2020

POLYTOMIES AND THE POWER OF PHYLOGENETIC INFERENCE.

1 reference

12 December 2020

Independent amplification of two classes of Tourists in some Oryza species

1 reference

12 December 2020

Identifiers

DOI

10.1186/GB-2008-9-3-R49

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18315873%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

3 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18315873%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

PubMed publication ID

18315873

1 reference