(Q33618921)

28 July 2017

title

Bayesian network analysis of targeting interactions in chromatin (English)

1 reference

28 July 2017

1 reference

1

Bas van Steensel

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Ulrich Braunschweig

series ordinal

2

object named as

Ulrich Braunschweig

1 reference

28 July 2017

Guillaume J Filion

3

0 references

Trey Ideker

series ordinal

6

object named as

Trey Ideker

1 reference

28 July 2017

Menzies Chen

4

1 reference

28 July 2017

Joke G van Bemmel

series ordinal

5

1 reference

28 July 2017

publication date

9 December 2009

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28 July 2017

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28 July 2017

volume

20

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28 July 2017

issue

2

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28 July 2017

page(s)

190-200

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High-resolution mapping of heterochromatin redistribution in a Drosophila position-effect variegation model

28 July 2017

cites work

1 reference

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Chromatin domains in higher eukaryotes: insights from genome-wide mapping studies

21 June 2018

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Global reorganization of replication domains during embryonic stem cell differentiation

21 June 2018

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Network inference using informative priors

21 June 2018

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Seeded Bayesian Networks: constructing genetic networks from microarray data

21 June 2018

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Inferring causal relationships among different histone modifications and gene expression

21 June 2018

1 reference

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Global chromatin domain organization of the Drosophila genome

21 June 2018

1 reference

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21 June 2018

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Chromatin remodeling: insights and intrigue from single-molecule studies

21 June 2018

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Transcription factor access to promoter elements.

21 June 2018

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Global analysis of patterns of gene expression during Drosophila embryogenesis

21 June 2018

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The complex language of chromatin regulation during transcription

21 June 2018

1 reference

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Rules and regulation in the primary structure of chromatin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

High-resolution mapping reveals links of HP1 with active and inactive chromatin components

21 June 2018

1 reference

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Global patterns of histone modifications

21 June 2018

1 reference

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HP1 controls genomic targeting of four novel heterochromatin proteins in Drosophila

21 June 2018

1 reference

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Prospero acts as a binary switch between self-renewal and differentiation in Drosophila neural stem cells

21 June 2018

1 reference

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Two Dobzhansky-Muller genes interact to cause hybrid lethality in Drosophila

21 June 2018

1 reference

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Polycomb silencers control cell fate, development and cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

DamID: mapping of in vivo protein-genome interactions using tethered DNA adenine methyltransferase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Genome-wide analysis of protein-DNA interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Genome-wide profiling of PRC1 and PRC2 Polycomb chromatin binding in Drosophila melanogaster

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Gene network inference from incomplete expression data: transcriptional control of hematopoietic commitment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

The transcriptional repressor dMnt is a regulator of growth in Drosophila melanogaster

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Mapping of genetic and epigenetic regulatory networks using microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Bayesian network analysis of signaling networks: a primer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Advances to Bayesian network inference for generating causal networks from observational biological data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Hairy transcriptional repression targets and cofactor recruitment in Drosophila

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Inferring cellular networks using probabilistic graphical models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Distinct HP1 and Su(var)3-9 complexes bind to sets of developmentally coexpressed genes depending on chromosomal location

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

A protein interaction map of Drosophila melanogaster

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Genome-wide Mapping of Protein-DNA Interactions by Chromatin Immunoprecipitation and DNA Microarray Hybridization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Genomic binding by the Drosophila Myc, Max, Mad/Mnt transcription factor network

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Genomewide analysis of Drosophila GAGA factor target genes reveals context-dependent DNA binding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

The Drosophila BRM complex facilitates global transcription by RNA polymerase II

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Context-specific Bayesian clustering for gene expression data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Using Bayesian networks to analyze expression data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Chromosomal localization links the SIN3-RPD3 complex to the regulation of chromatin condensation, histone acetylation and gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

A functional interaction between the histone deacetylase Rpd3 and the corepressor groucho in Drosophila development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

The Rpd3 histone deacetylase is required for segmentation of the Drosophila embryo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Drosophila CtBP: a Hairy-interacting protein required for embryonic segmentation and hairy-mediated transcriptional repression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Groucho is required for Drosophila neurogenesis, segmentation, and sex determination and interacts directly with hairy-related bHLH proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Novel Jun- and Fos-related proteins in Drosophila are functionally homologous to enhancer factor AP-1

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Telomere-proximal DNA in Saccharomyces cerevisiae is refractory to methyltransferase activity in vivo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

SUUR joins separate subsets of PcG, HP1 and B-type lamin targets in Drosophila.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Characterization of the Drosophila melanogaster genome at the nuclear lamina.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Genome-scale profiling of histone H3.3 replacement patterns.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

The Drosophila MBD2/3 protein mediates interactions between the MI-2 chromatin complex and CpT/A-methylated DNA.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Evaluating functional network inference using simulations of complex biological systems.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Functional dissection of the Drosophila modifier of variegation Su(var)3-7.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Inferring subnetworks from perturbed expression profiles

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

Introduction of a DNA methyltransferase into Drosophila to probe chromatin structure in vivo.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813475

The genomic silencing of position-effect variegation in Drosophila melanogaster: interaction between the heterochromatin-associated proteins Su(var)3-7 and HP1

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20007327

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20007327

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.098822.109

1 reference

28 July 2017

1 reference

28 July 2017

1 reference