(Q35033165)

5 August 2017

title

Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster (English)

1 reference

5 August 2017

main subject

Drosophila melanogaster

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author

Lucas D Ward

6

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5 August 2017

4

Elzo de Wit

0 references

Bas van Steensel

11

object named as

Bas van Steensel

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author name string

Celine Moorman

1

1 reference

5 August 2017

Ling V Sun

2

1 reference

5 August 2017

Junbai Wang

3

1 reference

5 August 2017

Wendy Talhout

5

1 reference

5 August 2017

Frauke Greil

7

1 reference

5 August 2017

Xiang-Jun Lu

8

1 reference

5 August 2017

Kevin P White

9

1 reference

5 August 2017

Harmen J Bussemaker

10

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5 August 2017

language of work or name

English

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publication date

31 July 2006

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Proceedings of the National Academy of Sciences of the United States of America

5 August 2017

published in

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5 August 2017

volume

103

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5 August 2017

issue

32

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5 August 2017

page(s)

12027-12032

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Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.

5 August 2017

cites work

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8 July 2018

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Chromatin profiling, DamID and the emerging landscape of gene expression

8 July 2018

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Profiling condition-specific, genome-wide regulation of mRNA stability in yeast

8 July 2018

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8 July 2018

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Mapping of genetic and epigenetic regulatory networks using microarrays

8 July 2018

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Applications of DNA tiling arrays to experimental genome annotation and regulatory pathway discovery

8 July 2018

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8 July 2018

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Transcriptional networks: reverse-engineering gene regulation on a global scale

8 July 2018

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Transcriptional regulatory code of a eukaryotic genome

8 July 2018

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Hairy transcriptional repression targets and cofactor recruitment in Drosophila

8 July 2018

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Global nature of dynamic protein-chromatin interactions in vivo: three-dimensional genome scanning and dynamic interaction networks of chromatin proteins

8 July 2018

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Computational prediction of transcription-factor binding site locations

8 July 2018

1 reference

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8 July 2018

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Distinct HP1 and Su(var)3-9 complexes bind to sets of developmentally coexpressed genes depending on chromosomal location

8 July 2018

1 reference

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Epigenomic profiling using microarrays

8 July 2018

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Protein-DNA interaction mapping using genomic tiling path microarrays in Drosophila

8 July 2018

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Genomic binding by the Drosophila Myc, Max, Mad/Mnt transcription factor network

8 July 2018

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Genomewide analysis of Drosophila GAGA factor target genes reveals context-dependent DNA binding

8 July 2018

1 reference

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TRANSFAC: transcriptional regulation, from patterns to profiles

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1567692

Looping and interaction between hypersensitive sites in the active beta-globin locus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1567692

Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study

8 July 2018

1 reference

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Transcriptional regulatory networks in Saccharomyces cerevisiae

8 July 2018

1 reference

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Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo

8 July 2018

1 reference

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Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1567692

Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1567692

The hinge and chromo shadow domain impart distinct targeting of HP1-like proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1567692

Chromatin profiling using targeted DNA adenine methyltransferase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1567692

Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1567692

The genome sequence of Drosophila melanogaster

8 July 2018

1 reference

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A single amino acid can determine the DNA binding specificity of homeodomain proteins.

8 July 2018

1 reference

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DNA specificity of the bicoid activator protein is determined by homeodomain recognition helix residue 9

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1567692

Predicting gene expression from sequence

8 July 2018

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Coordination of replication and transcription along a Drosophila chromosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0605003103

Genome-scale profiling of histone H3.3 replacement patterns.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0605003103

A gene expression map for the euchromatic genome of Drosophila melanogaster.

21 January 2018

1 reference

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CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0605003103

21 January 2018

Identifiers

DOI

10.1073/PNAS.0605003103

1 reference

5 August 2017

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1 reference

5 August 2017

1 reference