(Q33621839)

28512451

28 July 2017

title

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life (English)

1 reference

28 July 2017

0 references

2

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10 June 2020

Emilie MULLER

4

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10 June 2020

Cedric C Laczny

6

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10 June 2020

Paul Wilmes

12

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10 June 2020

11

Carine de Beaufort

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10 June 2020

10

Anders F Andersson

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10 June 2020

5

Shaman Narayanasamy

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10 June 2020

1

Linda Wampach

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10 June 2020

3

Angela Hogan

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10 June 2020

9

Jean Bottu

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10 June 2020

author name string

Luisa W Hugerth

7

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10 June 2020

Lutz Bindl

8

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10 June 2020

publication date

2 May 2017

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28512451

Frontiers in Microbiology

28 July 2017

published in

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10 June 2020

volume

8

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10 June 2020

page(s)

738

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describes a project that uses

10 June 2020

DESeq2

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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The mode of delivery affects the diversity and colonization pattern of the gut microbiota during the first year of infants' life: a systematic review

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Impact of the Chromatin Remodeling Factor CHD1 on Gut Microbiome Composition of Drosophila melanogaster

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First-Pass Meconium Samples from Healthy Term Vaginally-Delivered Neonates: An Analysis of the Microbiota.

21 June 2018

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Got worms? Perinatal exposure to helminths prevents persistent immune sensitization and cognitive dysfunction induced by early-life infection.

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16S rRNA gene-based profiling of the human infant gut microbiota is strongly influenced by sample processing and PCR primer choice

21 June 2018

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Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

21 June 2018

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Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data.

21 June 2018

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Archaeal Lineages within the Human Microbiome: Absent, Rare or Elusive?

21 June 2018

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

21 June 2018

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21 June 2018

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Why is initial bacterial colonization of the intestine important to infants' and children's health?

21 June 2018

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Prenatal exposure to antibiotics, cesarean section and risk of childhood obesity

21 June 2018

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21 June 2018

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The intestinal microbiome in early life: health and disease

21 June 2018

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Varying gestational age patterns in cesarean delivery: an international comparison

21 June 2018

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Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences

21 June 2018

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Patterned progression of bacterial populations in the premature infant gut.

21 June 2018

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The microbial eukaryote Blastocystis is a prevalent and diverse member of the healthy human gut microbiota.

21 June 2018

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21 June 2018

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21 June 2018

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Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia

21 June 2018

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Meconium microbiome analysis identifies bacteria correlated with premature birth

21 June 2018

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Low gut microbiota diversity in early infancy precedes asthma at school age.

21 June 2018

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21 June 2018

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Fungi of the murine gut: episodic variation and proliferation during antibiotic treatment

21 June 2018

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Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section

21 June 2018

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Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

21 June 2018

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21 June 2018

Archaea on human skin.

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Which sequencing depth is sufficient to describe patterns in bacterial α- and β-diversity?

21 June 2018

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21 June 2018

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Cohabiting family members share microbiota with one another and with their dogs

21 June 2018

1 reference

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Waiting for the human intestinal Eukaryotome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Meconium microbiota types dominated by lactic acid or enteric bacteria are differentially associated with maternal eczema and respiratory problems in infants

21 June 2018

1 reference

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A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets

21 June 2018

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The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy

21 June 2018

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Autoimmunity: The worm returns

21 June 2018

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Effect of breast and formula feeding on gut microbiota shaping in newborns

21 June 2018

1 reference

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Methanogenic archaea in subgingival sites: a review

21 June 2018

1 reference

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The principal fucosylated oligosaccharides of human milk exhibit prebiotic properties on cultured infant microbiota

21 June 2018

1 reference

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The human milk microbiome changes over lactation and is shaped by maternal weight and mode of delivery

21 June 2018

1 reference

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Molecular detection of eukaryotes in a single human stool sample from Senegal

21 June 2018

1 reference

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Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Human gut microbiome viewed across age and geography

21 June 2018

1 reference

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Molecular typing of fecal eukaryotic microbiota of human infants and their respective mothers.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Patterns of early gut colonization shape future immune responses of the host

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Microbial exposure during early life has persistent effects on natural killer T cell function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Low diversity of the gut microbiota in infants with atopic eczema

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Barcoded pyrosequencing reveals that consumption of galactooligosaccharides results in a highly specific bifidogenic response in humans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins

21 June 2018

1 reference

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Human milk glycobiome and its impact on the infant gastrointestinal microbiota

21 June 2018

1 reference

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Succession of microbial consortia in the developing infant gut microbiome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Breast- v. formula-feeding: impacts on the digestive tract and immediate and long-term health effects

21 June 2018

1 reference

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The role of methane in intestinal diseases

21 June 2018

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The epidemiology of obesity

21 June 2018

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High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol

21 June 2018

1 reference

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The development of intestinal lymphoid tissues at the interface of self and microbiota

21 June 2018

1 reference

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Changes in gut microbiota control inflammation in obese mice through a mechanism involving GLP-2-driven improvement of gut permeability

21 June 2018

1 reference

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Cesarean delivery may affect the early biodiversity of intestinal bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Antibiotic-induced perturbations of the intestinal microbiota alter host susceptibility to enteric infection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Methanogenic archaea: ecologically relevant differences in energy conservation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Fungi and inflammatory bowel diseases: Alterations of composition and diversity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Is meconium from healthy newborns actually sterile?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Delivery settings and caesarean section rates in China

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Commensal bacteria and epithelial cross talk in the developing intestine

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Development of the human infant intestinal microbiota

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

An obesity-associated gut microbiome with increased capacity for energy harvest

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Factors influencing the composition of the intestinal microbiota in early infancy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Placental transfer of antibiotics administered to the mother: a review.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

The developing intestinal ecosystem: implications for the neonate

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Effects of intestinal microflora and the environment on the development of asthma and allergy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Horizontal transmission of Candida parapsilosis candidemia in a neonatal intensive care unit

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Development of a PCR assay for identification of staphylococci at genus and species levels

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Fecal microflora in healthy infants born by different methods of delivery: permanent changes in intestinal flora after cesarean delivery

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Tissue and body fluid distribution of antibacterial agents in pregnant and lactating women

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

The requirement of intestinal bacterial flora for the development of an IgE production system fully susceptible to oral tolerance induction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Detection and identification of fungal pathogens in blood by using molecular probes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Methanogenic bacteria in human vaginal samples

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Improvement of phylum- and class-specific primers for real-time PCR quantification of bacterial taxa.

21 June 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2017.00738

The individual-specific and diverse nature of the preterm infant microbiota.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2017.00738

Vertical and horizontal transmission of Candida albicans in very low birth weight infants using DNA fingerprinting techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2017.00738

Saccharomyces boulardii'. A Review of an Innovative Biotherapeutic Agent

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2017.00738

Antibiotic prophylaxis in obstetric procedures

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2017.00738

Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2017.00738

Early differences in fecal microbiota composition in children may predict overweight.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5411419

Establishment and development of intestinal microbiota in preterm neonates

30 October 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2017.00738

Determinants of the human infant intestinal microbiota after the introduction of first complementary foods in infant samples from five European centres

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2017.00738

Reduced Enterobacterial and Increased Staphylococcal Colonization of the Infantile Bowel: An Effect of Hygienic Lifestyle?

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2017.00738

The intestinal microflora in allergic Estonian and Swedish 2-year-old children

21 January 2018

1 reference

12 December 2020

Differences in fecal microflora between patients with atopic dermatitis and healthy control subjects

1 reference

12 December 2020

Detection of Haemophilus influenzae in cerebrospinal fluids by polymerase chain reaction DNA amplification

1 reference

12 December 2020

Sequential Isolation of DNA, RNA, Protein, and Metabolite Fractions from Murine Organs and Intestinal Contents for Integrated Omics of Host–Microbiota Interactions

1 reference

12 December 2020

Identifiers

DOI

10.3389/FMICB.2017.00738

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28512451%20AND%20SRC:MED&resulttype=core&format=json

release_kv2w2qq4xrg3jbij4q2q64nxne

10 June 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/kv2w2qq4xrg3jbij4q2q64nxne

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28512451%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

28512451

1 reference