(Q33624191)

28 July 2017

title

HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data (English)

1 reference

28 July 2017

Ming Hu

5

0 references

Shanker Kalyana-Sundaram

object named as

Shanker Kalyana-Sundaram

6

0 references

Zhaohui Steve Qin

object named as

Zhaohui S Qin

1

0 references

Arul Chinnaiyan

8

object named as

Arul M Chinnaiyan

1 reference

28 July 2017

4

Christopher A Maher

1 reference

28 July 2017

Jianjun Yu

2

1 reference

28 July 2017

Jincheng Shen

3

1 reference

28 July 2017

Jindan Yu

7

1 reference

28 July 2017

publication date

2 July 2010

1 reference

28 July 2017

1 reference

28 July 2017

volume

11

1 reference

28 July 2017

page(s)

369

1 reference

Creative Commons Attribution 2.0 Generic

28 July 2017

copyright license

start time

2 July 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-11-369

0 references

cites work

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14 July 2018

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A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments

14 July 2018

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BayesPeak: Bayesian analysis of ChIP-seq data

14 July 2018

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14 July 2018

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ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands

14 July 2018

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ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions

14 July 2018

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14 July 2018

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ChIP-seq accurately predicts tissue-specific activity of enhancers

14 July 2018

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Genomic location analysis by ChIP-Seq

14 July 2018

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Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

14 July 2018

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Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing

14 July 2018

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PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

14 July 2018

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14 July 2018

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Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks

14 July 2018

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Design and analysis of ChIP-seq experiments for DNA-binding proteins

14 July 2018

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An integrated software system for analyzing ChIP-chip and ChIP-seq data

14 July 2018

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14 July 2018

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Parameter estimation for robust HMM analysis of ChIP-chip data

14 July 2018

1 reference

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Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

14 July 2018

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An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data

14 July 2018

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A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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ChIPping away at gene regulation

14 July 2018

1 reference

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Dynamic regulation of nucleosome positioning in the human genome

14 July 2018

1 reference

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ChIP-chip for genome-wide analysis of protein binding in mammalian cells

14 July 2018

1 reference

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14 July 2018

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Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies

14 July 2018

1 reference

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Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

14 July 2018

1 reference

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Genome-wide mapping of in vivo protein-DNA interactions

14 July 2018

1 reference

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Integrating quantitative information from ChIP-chip experiments into motif finding

14 July 2018

1 reference

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High-resolution profiling of histone methylations in the human genome

14 July 2018

1 reference

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A hidden Markov model approach for determining expression from genomic tiling micro arrays

14 July 2018

1 reference

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14 July 2018

1 reference

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912305

A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912305

MatInspector and beyond: promoter analysis based on transcription factor binding sites

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912305

The human genome browser at UCSC

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912305

Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912305

Genome-wide location and function of DNA binding proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912305

Mapping Polycomb-repressed domains in the bithorax complex using in vivo formaldehyde cross-linked chromatin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912305

Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912305

ChIP-seq: welcome to the new frontier

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912305

Transcript mapping with high-density oligonucleotide tiling arrays.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912305

30 October 2018

Identifiers

DOI

10.1186/1471-2105-11-369

1 reference

journals/bmcbi/QinYSMHKYC10

28 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

28 July 2017

1 reference