Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q33625340)
Watch
English
ChIP on Chip: surprising results are often artifacts.
scientific article
In more languages
default for all languages
No label defined
No description defined
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
2996942
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20602746%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 February 2020
title
ChIP on Chip: surprising results are often artifacts
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
2996942
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20602746%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 February 2020
author
Torsten Waldminghaus
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
2996942
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20602746%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 February 2020
author name string
Kirsten Skarstad
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
2996942
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20602746%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 February 2020
language of work or name
English
0 references
publication date
5 July 2010
1 reference
stated in
Europe PubMed Central
PMC publication ID
2996942
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20602746%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 February 2020
published in
BMC Genomics
1 reference
stated in
Europe PubMed Central
PMC publication ID
2996942
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20602746%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 February 2020
volume
11
1 reference
stated in
Europe PubMed Central
PMC publication ID
2996942
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20602746%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 February 2020
page(s)
414
1 reference
stated in
Europe PubMed Central
PMC publication ID
2996942
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20602746%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 February 2020
describes a project that uses
limma
object named as
limma
2 references
stated in
Europe PubMed Central
retrieved
22 June 2022
reference URL
https://europepmc.org/article/PMC/2996942
based on heuristic
inferred from PubMed Central ID database lookup
stated in
CZ Software Mentions: A large dataset of software mentions in the biomedical literature
cites work
Mapping accessible chromatin regions using Sono-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
NsrR targets in the Escherichia coli genome: new insights into DNA sequence requirements for binding and a role for NsrR in the regulation of motility
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Distinguishing direct versus indirect transcription factor-DNA interactions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Protein occupancy landscape of a bacterial genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Histone H2A.Z is essential for estrogen receptor signaling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Conserved features of cohesin binding along fission yeast chromosomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Where does mediator bind in vivo?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
The Escherichia coli SeqA protein.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Development and application of versatile high density microarrays for genome-wide analysis of Streptomyces coelicolor: characterization of the HspR regulon
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Identification of cis-acting sites for condensin loading onto budding yeast chromosomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Genome-wide identification of binding sites for the nitric oxide-sensitive transcriptional regulator NsrR.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Normalization and experimental design for ChIP-chip data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Chromatin immunoprecipitation and microarray-based analysis of protein location
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Genome-wide analysis of estrogen receptor binding sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Genome-wide location of the coactivator mediator: Binding without activation and transient Cdk8 interaction on DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Genome-wide occupancy profile of mediator and the Srb8-11 module reveals interactions with coding regions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
GenomeViz: visualizing microbial genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Genomic studies with Escherichia coli MelR protein: applications of chromatin immunoprecipitation and microarrays.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Bioconductor: open software development for computational biology and bioinformatics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Normalization of cDNA microarray data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Genome-wide location and function of DNA binding proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
A case for sliding SeqA tracts at anchored replication forks during Escherichia coli chromosome replication and segregation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
SeqA: a negative modulator of replication initiation in E. coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
E. coli SeqA protein binds oriC in two different methyl-modulated reactions appropriate to its roles in DNA replication initiation and origin sequestration
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
21 June 2018
Recruitment of condensin to replication origin regions by ParB/SpoOJ promotes chromosome segregation in B. subtilis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
30 October 2018
ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
30 October 2018
Extensive functional overlap between sigma factors in Escherichia coli.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
30 October 2018
The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
30 October 2018
Sequential binding of SeqA protein to nascent DNA segments at replication forks in synchronized cultures of Escherichia coli.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996942
retrieved
30 October 2018
E. coli oriC and the dnaA gene promoter are sequestered from dam methyltransferase following the passage of the chromosomal replication fork
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20602746
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Activator-specific recruitment of Mediator in vivo
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20602746
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/1471-2164-11-414
1 reference
stated in
Europe PubMed Central
PMC publication ID
2996942
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20602746%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 February 2020
Dimensions Publication ID
1053010297
1 reference
stated in
SciGraph
reference URL
https://scigraph.springernature.com/pub.10.1186/1471-2164-11-414
retrieved
9 September 2019
PMC publication ID
2996942
1 reference
stated in
Europe PubMed Central
PMC publication ID
2996942
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20602746%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 February 2020
PubMed publication ID
20602746
1 reference
stated in
Europe PubMed Central
PMC publication ID
2996942
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20602746%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 February 2020
ResearchGate publication ID
45093802
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit