(Q33629330)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27789812%20AND%20SRC:MED&resulttype=core&format=json

26 March 2020

title

Systems-level analysis of mechanisms regulating yeast metabolic flux (English)

1 reference

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26 March 2020

2

1 reference

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26 March 2020

Junyoung O Park

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27789812%20AND%20SRC:MED&resulttype=core&format=json

26 March 2020

Patrick A Gibney

7

1 reference

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26 March 2020

John D. Storey

9

1 reference

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26 March 2020

6

David H Perlman

1 reference

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26 March 2020

author name string

Sean R Hackett

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27789812%20AND%20SRC:MED&resulttype=core&format=json

26 March 2020

Wenxin Xu

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27789812%20AND%20SRC:MED&resulttype=core&format=json

26 March 2020

Jonathan Goya

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27789812%20AND%20SRC:MED&resulttype=core&format=json

26 March 2020

Joshua D Rabinowitz

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27789812%20AND%20SRC:MED&resulttype=core&format=json

26 March 2020

David Botstein

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27789812%20AND%20SRC:MED&resulttype=core&format=json

26 March 2020

language of work or name

English

0 references

publication date

27 October 2016

1 reference

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26 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27789812%20AND%20SRC:MED&resulttype=core&format=json

26 March 2020

volume

354

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27789812%20AND%20SRC:MED&resulttype=core&format=json

26 March 2020

issue

6311

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27789812%20AND%20SRC:MED&resulttype=core&format=json

Pseudo-transition Analysis Identifies the Key Regulators of Dynamic Metabolic Adaptations from Steady-State Data

26 March 2020

cites work

1 reference

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A nested parallel experiment demonstrates differences in intensity-dependence between RNA-seq and microarrays

21 June 2018

1 reference

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Domain organization, catalysis and regulation of eukaryotic cystathionine beta-synthases

21 June 2018

1 reference

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Revising the Representation of Fatty Acid, Glycerolipid, and Glycerophospholipid Metabolism in the Consensus Model of Yeast Metabolism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis

21 June 2018

1 reference

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New types of experimental data shape the use of enzyme kinetics for dynamic network modeling

21 June 2018

1 reference

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Coordination of bacterial proteome with metabolism by cyclic AMP signalling.

21 June 2018

1 reference

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Consistent estimation of Gibbs energy using component contributions

21 June 2018

1 reference

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A century of enzyme kinetic analysis, 1913 to 2013.

21 June 2018

1 reference

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Glycolytic strategy as a tradeoff between energy yield and protein cost

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Yeast Pif1 helicase exhibits a one-base-pair stepping mechanism for unwinding duplex DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Temporal system-level organization of the switch from glycolytic to gluconeogenic operation in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Mechanism of feedback allosteric inhibition of ATP phosphoribosyltransferase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Stitching together multiple data dimensions reveals interacting metabolomic and transcriptomic networks that modulate cell regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Environmental and genetic perturbations reveal different networks of metabolic regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

A flux-sensing mechanism could regulate the switch between respiration and fermentation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Liquid chromatography-high resolution mass spectrometry analysis of fatty acid metabolism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

α-Ketoglutarate coordinates carbon and nitrogen utilization via enzyme I inhibition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Regulation and control of metabolic fluxes in microbes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

BRENDA, the enzyme information system in 2011

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Growth-limiting intracellular metabolites in yeast growing under diverse nutrient limitations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

rNMR: open source software for identifying and quantifying metabolites in NMR spectra

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Universal sample preparation method for proteome analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Functional organization of the S. cerevisiae phosphorylation network

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Kinetic flux profiling for quantitation of cellular metabolic fluxes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Absolute quantitation of intracellular metabolite concentrations by an isotope ratio-based approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

ChemmineR: a compound mining framework for R.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Pyruvate kinase M2 is a phosphotyrosine-binding protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

ChEBI: a database and ontology for chemical entities of biological interest

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Desensitization of feedback inhibition of the Saccharomyces cerevisiae gamma-glutamyl kinase enhances proline accumulation and freezing tolerance

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

citrate inhibition-resistant form of 6-phosphofructo-1-kinase from Aspergillus niger

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Feedback control of morphogenesis in fungi by aromatic alcohols

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Characterization of the metabolic shift between oxidative and fermentative growth in Saccharomyces cerevisiae by comparative 13C flux analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

The effects of alternate optimal solutions in constraint-based genome-scale metabolic models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Statistical significance for genomewide studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

The glycolytic flux in Escherichia coli is controlled by the demand for ATP.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Missing value estimation methods for DNA microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Purification, characterisation and cDNA sequencing of pyruvate decarboxylase from Zygosaccharomyces bisporus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Accurate quantitation of protein expression and site-specific phosphorylation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Kinetic and thermodynamic characterizations of yeast guanylate kinase.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

Dynamic aspects of vacuolar and cytosolic amino acid pools of Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5414049

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.

21 June 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae: II. Mathematical model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Dynamic modeling of the central carbon metabolism of Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Statistical reconciliation of the elemental and molecular biomass composition of Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Bringing metabolic networks to life: convenience rate law and thermodynamic constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Regression and time series model selection in small samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Regulation of yeast pyruvate kinase by ultrasensitive allostery independent of phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Lost in Transition: Start-Up of Glycolysis Yields Subpopulations of Nongrowing Cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Large-scale functional analysis of the roles of phosphorylation in yeast metabolic pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Carbohydrate analysis by a phenol-sulfuric acid method in microplate format

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Metabolite concentrations, fluxes and free energies imply efficient enzyme usage

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Insights into the mechanism of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (Phe) from Escherichia coli using a transient kinetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Feedback Control of Purine Biosynthesis by Purine Ribonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAF2786

Characterization of trehalose-6-phosphate synthase and trehalose-6-phosphate phosphatase of Saccharomyces cerevisiae

21 January 2018

1 reference

12 December 2020

A direct spectrophotometric assay for pyruvate kinase

1 reference

12 December 2020

Somewhat in control--the role of transcription in regulating microbial metabolic fluxes

1 reference

12 December 2020

Adenylate kinase from bakers' yeast. IV. Substrate and inhibitor structurll requirements

1 reference

12 December 2020

Kinetics of aspartate transcarbamylase from Escherichia coli for the reverse direction of reaction

1 reference

12 December 2020

Systematic identification of allosteric protein-metabolite interactions that control enzyme activity in vivo

1 reference

12 December 2020

Simultaneous genomic overexpression of seven glycolytic enzymes in the yeast Saccharomyces cerevisiae

1 reference

12 December 2020

Identifiers

DOI

10.1126/SCIENCE.AAF2786

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27789812%20AND%20SRC:MED&resulttype=core&format=json

26 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27789812%20AND%20SRC:MED&resulttype=core&format=json

26 March 2020

PubMed publication ID

27789812

1 reference