(Q33631984)

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Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions

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Europe PubMed Central

PubMed publication ID

28 July 2017

Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions (English)

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

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Margaret F Romine

2

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Europe PubMed Central

PubMed publication ID

28 July 2017

author name string

Tatiana V Karpinets

1

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Europe PubMed Central

PubMed publication ID

28 July 2017

Denise D Schmoyer

3

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Europe PubMed Central

PubMed publication ID

28 July 2017

Guruprasad H Kora

4

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Mustafa H Syed

5

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Michael R Leuze

6

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Europe PubMed Central

PubMed publication ID

28 July 2017

Margrethe H Serres

7

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Byung H Park

8

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Nagiza F Samatova

9

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Europe PubMed Central

PubMed publication ID

28 July 2017

Edward C Uberbacher

10

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Europe PubMed Central

PubMed publication ID

28 July 2017

publication date

6 July 2010

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Europe PubMed Central

PubMed publication ID

28 July 2017

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Europe PubMed Central

PubMed publication ID

28 July 2017

2010

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Europe PubMed Central

PubMed publication ID

28 July 2017

baq012

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Europe PubMed Central

PubMed publication ID

28 July 2017

copyright license

Creative Commons Attribution-NonCommercial 2.5 Generic

3 October 2016

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April 2022 Public Data File from Crossref

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0 references

Shewregdb: database and visualization environment for experimental and predicted regulatory information in Shewanella oneidensis mr-1.

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21 June 2018

Conserved synteny at the protein family level reveals genes underlying Shewanella species' cold tolerance and predicts their novel phenotypes

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21 June 2018

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21 June 2018

Regulation of glucose metabolism in Pseudomonas: the phosphorylative branch and entner-doudoroff enzymes are regulated by a repressor containing a sugar isomerase domain.

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21 June 2018

Exosome complex and pervasive transcription in eukaryotic genomes

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21 June 2018

Involvement of a membrane-bound class III adenylate cyclase in regulation of anaerobic respiration in Shewanella oneidensis MR-1.

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21 June 2018

Discovering cis-regulatory RNAs in Shewanella genomes by Support Vector Machines

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21 June 2018

Structure and complexity of a bacterial transcriptome.

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21 June 2018

Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization

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21 June 2018

Bidirectional promoters generate pervasive transcription in yeast

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21 June 2018

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21 June 2018

Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes

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21 June 2018

EcoCyc: a comprehensive view of Escherichia coli biology

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21 June 2018

Transcriptome analysis reveals response regulator SO2426-mediated gene expression in Shewanella oneidensis MR-1 under chromate challenge

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21 June 2018

The cis-regulatory map of Shewanella genomes

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21 June 2018

Towards environmental systems biology of Shewanella

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21 June 2018

Identification of mobile elements and pseudogenes in the Shewanella oneidensis MR-1 genome

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21 June 2018

A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae

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21 June 2018

Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses.

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21 June 2018

Ecology and biotechnology of the genus Shewanella

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21 June 2018

Growth with high planktonic biomass in Shewanella oneidensis fuel cells

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21 June 2018

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

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21 June 2018

Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata

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21 June 2018

Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

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21 June 2018

Extracellular respiration

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911847

21 June 2018

CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats

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21 June 2018

SYSTOMONAS--an integrated database for systems biology analysis of Pseudomonas

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21 June 2018

PEDANT genome database: 10 years online

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21 June 2018

RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes

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21 June 2018

MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups

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21 June 2018

TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels

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21 June 2018

The SUPERFAMILY database in 2007: families and functions

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21 June 2018

Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes

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21 June 2018

ODB: a database of operons accumulating known operons across multiple genomes

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21 June 2018

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

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21 June 2018

RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements

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21 June 2018

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations

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21 June 2018

Validation of Shewanella oneidensis MR-1 small proteins by AMT tag-based proteome analysis

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21 June 2018

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

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21 June 2018

The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information

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21 June 2018

EchoBASE: an integrated post-genomic database for Escherichia coli

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Rfam: annotating non-coding RNAs in complete genomes

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21 June 2018

Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2911847

21 June 2018

MUSCLE: multiple sequence alignment with high accuracy and high throughput

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21 June 2018

MEROPS: the peptidase database.

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21 June 2018

Responses of the central metabolism in Escherichia coli to phosphoglucose isomerase and glucose-6-phosphate dehydrogenase knockouts

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The MetaCyc Database

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21 June 2018

The Pseudomonas aeruginosa devB/SOL homolog, pgl, is a member of the hex regulon and encodes 6-phosphogluconolactonase

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21 June 2018

Simultaneous analysis of physiological and electrical output changes in an operating microbial fuel cell with Shewanella oneidensis

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21 January 2018

Optimization of label-free DNA detection with electrochemical impedance spectroscopy using PNA probes

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21 January 2018

MovieMaker: a web server for rapid rendering of protein motions and interactions

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21 January 2018

PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes

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21 January 2018

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21 January 2018

Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes.

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21 January 2018

Confirmation of the expression of a large set of conserved hypothetical proteins in Shewanella oneidensis MR-1.

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21 January 2018

Participation of the Entner-Doudoroff pathway in Escherichia coli strains with an inactive phosphotransferase system (PTS- Glc+) in gluconate and glucose batch cultures

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21 January 2018

Global metabolic response of Escherichia coli to gnd or zwf gene-knockout, based on 13C-labeling experiments and the measurement of enzyme activities

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21 January 2018

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30 October 2018

Identification of diverse carbon utilization pathways in Shewanella oneidensis MR-1 via expression profiling.

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30 October 2018

Identifiers

10.1093/DATABASE/BAQ012

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

ResearchGate publication ID

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