(Q33712125)

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Conserved synteny at the protein family level reveals genes underlying Shewanella species' cold tolerance and predicts their novel phenotypes

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scholarly article

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Europe PubMed Central

PubMed publication ID

28 July 2017

Conserved synteny at the protein family level reveals genes underlying Shewanella species' cold tolerance and predicts their novel phenotypes (English)

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Europe PubMed Central

PubMed publication ID

28 July 2017

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Margaret F Romine

8

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Europe PubMed Central

PubMed publication ID

28 July 2017

9

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Europe PubMed Central

PubMed publication ID

28 July 2017

Jim K Fredrickson

11

object named as

Jim K Fredrickson

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PubMed publication ID

28 July 2017

Kenneth H. Nealson

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Kenneth H Nealson

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28 July 2017

Margrethe H Serres

7

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Margrethe H Serres

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PubMed publication ID

28 July 2017

Anna Obraztsova

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Anna Y Obraztsova

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PubMed publication ID

28 July 2017

author name string

Tatiana V Karpinets

1

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28 July 2017

Yanbing Wang

3

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28 July 2017

Denise D Schmoyer

4

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28 July 2017

Guruprasad H Kora

5

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Europe PubMed Central

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28 July 2017

Byung H Park

6

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Europe PubMed Central

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28 July 2017

Terence B Kothe

10

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28 July 2017

Edward C Uberbacher

13

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28 July 2017

publication date

3 October 2009

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Europe PubMed Central

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28 July 2017

Functional and Integrative Genomics

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Europe PubMed Central

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28 July 2017

10

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Europe PubMed Central

PubMed publication ID

28 July 2017

1

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

97-110

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Europe PubMed Central

PubMed publication ID

28 July 2017

copyright license

Creative Commons Attribution-NonCommercial 2.0 Generic

3 October 2009

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April 2022 Public Data File from Crossref

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Europe PubMed Central

26 June 2022

https://europepmc.org/article/PMC/PMC2834769

based on heuristic

inferred from PubMed Central ID database lookup

Towards environmental systems biology of Shewanella

1 reference

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1 reference

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Ecology and biotechnology of the genus Shewanella

1 reference

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1 reference

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1 reference

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Proteomic studies of an Antarctic cold-adapted bacterium, Shewanella livingstonensis Ac10, for global identification of cold-inducible proteins.

1 reference

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Hydrogen metabolism in Shewanella oneidensis MR-1.

1 reference

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Recent developments in bacterial cold-shock response

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The ars Detoxification System Is Advantageous but Not Required for As(V) Respiration by the Genetically Tractable Shewanella Species Strain ANA-3

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1 reference

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Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov.

1 reference

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1 reference

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1 reference

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12 December 2020

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10.1007/S10142-009-0142-Y

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Europe PubMed Central

PubMed publication ID

28 July 2017

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PMC publication ID

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Europe PubMed Central

PubMed publication ID

28 July 2017

PubMed publication ID

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Europe PubMed Central

PubMed publication ID

28 July 2017

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