(Q33651062)

28 July 2017

title

A didactic model of macromolecular crowding effects on protein folding (English)

1 reference

28 July 2017

0 references

1 reference

Allen P Minton

2

0 references

Nikolay V. Dokholyan

object named as

Nikolay V Dokholyan

series ordinal

3

0 references

author name string

Douglas Tsao

series ordinal

1

1 reference

28 July 2017

language of work or name

English

0 references

publication date

3 August 2010

1 reference

28 July 2017

1 reference

28 July 2017

volume

5

1 reference

28 July 2017

issue

8

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28 July 2017

page(s)

e11936

1 reference

Creative Commons Attribution 4.0 International

28 July 2017

copyright license

start time

3 August 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Macromolecular crowding induces polypeptide compaction and decreases folding cooperativity

21 June 2018

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Dependence of protein folding stability and dynamics on the density and composition of macromolecular crowders

21 June 2018

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Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm

21 June 2018

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Effect of macromolecular crowding on protein binding stability: modest stabilization and significant biological consequences

21 June 2018

1 reference

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Atomistic modeling of macromolecular crowding predicts modest increases in protein folding and binding stability

21 June 2018

1 reference

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Sequence and crowding effects in the aggregation of a 10-residue fragment derived from islet amyloid polypeptide

21 June 2018

1 reference

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Nonadditive effects of mixed crowding on protein stability

21 June 2018

1 reference

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Folding, stability and shape of proteins in crowded environments: experimental and computational approaches

21 June 2018

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Crowding effects on the mechanical stability and unfolding pathways of ubiquitin

21 June 2018

1 reference

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Crowded, cell-like environment induces shape changes in aspherical protein

21 June 2018

1 reference

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Ab initio folding of proteins with all-atom discrete molecular dynamics

21 June 2018

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Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences

21 June 2018

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21 June 2018

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Exploring the suitability of coarse-grained techniques for the representation of protein dynamics

21 June 2018

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Coarse-grained molecular simulation of diffusion and reaction kinetics in a crowded virtual cytoplasm

21 June 2018

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Molecular crowding enhances native structure and stability of alpha/beta protein flavodoxin

21 June 2018

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Coarse-grained strategy for modeling protein stability in concentrated solutions. II: phase behavior

21 June 2018

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Coarse-grained strategy for modeling protein stability in concentrated solutions.

21 June 2018

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Molecular crowding enhances native state stability and refolding rates of globular proteins

21 June 2018

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Models for excluded volume interaction between an unfolded protein and rigid macromolecular cosolutes: macromolecular crowding and protein stability revisited.

21 June 2018

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21 June 2018

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Protein folding by the effects of macromolecular crowding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2914742

Competition between protein folding and aggregation with molecular chaperones in crowded solutions: insight from mesoscopic simulations

21 June 2018

1 reference

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Identifying the protein folding nucleus using molecular dynamics.

21 June 2018

1 reference

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Effect of a concentrated "inert" macromolecular cosolute on the stability of a globular protein with respect to denaturation by heat and by chaotropes: a statistical-thermodynamic model

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2914742

Discrete molecular dynamics studies of the folding of a protein-like model.

21 June 2018

1 reference

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Energetics of protein structure.

21 June 2018

1 reference

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Macromolecular crowding: biochemical, biophysical, and physiological consequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2914742

The effect of volume occupancy upon the thermodynamic activity of proteins: some biochemical consequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2914742

Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2914742

Modulation of calmodulin plasticity by the effect of macromolecular crowding

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011936

Effects of crowding and confinement on the structures of the transition state ensemble in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011936

Multiscale modeling of nucleosome dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011936

Insights into thermophilic archaebacterial membrane stability from simplified models of lipid membranes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011936

Molecular crowding: analysis of effects of high concentrations of inert cosolutes on biochemical equilibria and rates in terms of volume exclusion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011936

Macromolecular diffusion in crowded solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011936

Studies in Molecular Dynamics. I. General Method

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011936

Thermodynamics of denaturant-induced unfolding of a protein that exhibits variable two-state denaturation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011936

Excluded volume as a determinant of macromolecular structure and reactivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011936

On Interaction between Two Bodies Immersed in a Solution of Macromolecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011936

Molecular dynamics simulations at constant pressure and/or temperature

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011936

Simple but predictive protein models

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011936

Probing protein aggregation using discrete molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011936

Protein folding and binding in confined spaces and in crowded solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0011936

Crowding effects on the structural transitions in a flexible helical homopolymer

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20689808

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: dynamics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20689808

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Computational simulation of the statistical properties of unfolded proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20689808

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0011936

1 reference

28 July 2017

0 references

1 reference

28 July 2017

1 reference