(Q36510789)

14 August 2017

Generalized fundamental measure theory for atomistic modeling of macromolecular crowding (English)

1 reference

14 August 2017

1 reference

Huan-Xiang Zhou

2

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author name string

Sanbo Qin

series ordinal

1

1 reference

PMCID

3537823

14 August 2017

language of work or name

English

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publication date

26 March 2010

1 reference

14 August 2017

1 reference

14 August 2017

81

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14 August 2017

3 Pt 1

1 reference

14 August 2017

031919

1 reference

The folding transition-state ensemble of a four-helix bundle protein: helix propensity as a determinant and macromolecular crowding as a probe.

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Dependence of protein folding stability and dynamics on the density and composition of macromolecular crowders

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Method to Predict Crowding Effects by Postprocessing Molecular Dynamics Trajectories: Application to the Flap Dynamics of HIV-1 Protease.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Effect of macromolecular crowding on protein binding stability: modest stabilization and significant biological consequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Atomistic modeling of macromolecular crowding predicts modest increases in protein folding and binding stability

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Crowding effects on the mechanical stability and unfolding pathways of ubiquitin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

The effects of macromolecular crowding on the mechanical stability of protein molecules.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Crowded, cell-like environment induces shape changes in aspherical protein

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Molecular crowding enhances native structure and stability of alpha/beta protein flavodoxin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Density-functional theory for complex fluids

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Effect of macromolecular crowding agents on human immunodeficiency virus type 1 capsid protein assembly in vitro.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Molecular crowding limits the role of fetal hemoglobin in therapy for sickle cell disease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Molecular crowding enhances native state stability and refolding rates of globular proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Protein self-association induced by macromolecular crowding: a quantitative analysis by magnetic relaxation dispersion

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Enzymatic replication of the origin of the Escherichia coli chromosome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Effects of macromolecular crowding on the association of E. coli ribosomal particles

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Areas, volumes, packing and protein structure

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Nonadditive effects of mixed crowding on protein stability

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

The influence of macromolecular crowding on HIV-1 protease internal dynamics

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Separating the contribution of translational and rotational diffusion to protein association

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Elongation of actin filaments is a diffusion-limited reaction at the barbed end and is accelerated by inert macromolecules.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537823

Efficacy of macromolecular crowding in forcing proteins to fold

28 June 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.81.031919

Effects of pH, salt, and macromolecular crowding on the stability of FK506-binding protein: an integrated experimental and theoretical study

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.81.031919

Accelerated alpha-synuclein fibrillation in crowded milieu

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.81.031919

Macromolecular crowding accelerates amyloid formation by human apolipoprotein C-II.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.81.031919

Molecular crowding: analysis of effects of high concentrations of inert cosolutes on biochemical equilibria and rates in terms of volume exclusion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.81.031919

General methods for free-volume theory.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.81.031919

Voxel-based surface area estimation: from theory to practice

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.81.031919

Free-energy model for the inhomogeneous hard-sphere fluid mixture and density-functional theory of freezing

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.81.031919

The Geometry of the Ribosomal Polypeptide Exit Tunnel

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.81.031919

15N NMR spin relaxation dispersion study of the molecular crowding effects on protein folding under native conditions

21 January 2018

1 reference

12 December 2020

Molecular crowding accelerates fibrillization of alpha-synuclein: could an increase in the cytoplasmic protein concentration induce Parkinson's disease?

1 reference

12 December 2020

Destabilised mutants of ubiquitin gain equal stability in crowded solutions

1 reference

12 December 2020

Morphometric approach to the solvation free energy of complex molecules

1 reference

12 December 2020

10.1103/PHYSREVE.81.031919

Identifiers

DOI

1 reference

14 August 2017

0 references

1 reference

14 August 2017

1 reference

PMCID

3537823