(Q33709329)

28 July 2017

title

StrainSeeker: fast identification of bacterial strains from raw sequencing reads using user-provided guide trees (English)

1 reference

28 July 2017

8

Paul Naaber

0 references

Triinu Kõressaar

7

object named as

Triinu Kõressaar

1 reference

28 July 2017

Märt Roosaare

1

1 reference

28 July 2017

Mihkel Vaher

2

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28 July 2017

Lauris Kaplinski

3

1 reference

28 July 2017

Märt Möls

4

1 reference

28 July 2017

Reidar Andreson

5

1 reference

28 July 2017

Maarja Lepamets

6

1 reference

28 July 2017

Siiri Kõljalg

9

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28 July 2017

Maido Remm

10

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28 July 2017

publication date

18 May 2017

1 reference

28 July 2017

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28 July 2017

volume

5

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28 July 2017

page(s)

e3353

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Creative Commons Attribution 4.0 International

28 July 2017

copyright license

start time

18 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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An evaluation of the accuracy and speed of metagenome analysis tools

21 June 2018

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21 June 2018

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21 June 2018

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Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities.

21 June 2018

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21 June 2018

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SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

21 June 2018

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KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes.

21 June 2018

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Sigma: strain-level inference of genomes from metagenomic analysis for biosurveillance

21 June 2018

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Global dissemination of a multidrug resistant Escherichia coli clone

21 June 2018

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Kraken: ultrafast metagenomic sequence classification using exact alignments

21 June 2018

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Strain/species identification in metagenomes using genome-specific markers

21 June 2018

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Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples

21 June 2018

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21 June 2018

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The potential of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for the identification of biogroups of Cronobacter sakazakii

21 June 2018

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Multilocus sequence typing of total-genome-sequenced bacteria

21 June 2018

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Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli

21 June 2018

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 June 2018

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Multilocus sequence typing of bacteria

21 June 2018

1 reference

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Escherichia coli in disguise: molecular origins of Shigella

21 June 2018

1 reference

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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

21 June 2018

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

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GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.7717%2FPEERJ.3353

21 January 2018

Identifiers

DOI

10.7717/PEERJ.3353

1 reference

28 July 2017

1 reference

28 July 2017

1 reference