(Q33710080)

28 July 2017

title

A systematic study of genome context methods: calibration, normalization and combination (English)

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28 July 2017

3

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28 July 2017

Luciana Ferrer

1

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28 July 2017

Joseph M Dale

series ordinal

2

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28 July 2017

publication date

1 October 2010

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28 July 2017

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28 July 2017

volume

11

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28 July 2017

page(s)

493

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The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

28 July 2017

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21 June 2018

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21 June 2018

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The relative value of operon predictions.

21 June 2018

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Computing second derivatives in feed-forward networks: a review

21 June 2018

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Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling

21 June 2018

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The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

21 June 2018

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21 June 2018

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An improved method for identifying functionally linked proteins using phylogenetic profiles

21 June 2018

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Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: comparison with high-throughput experimental data

21 June 2018

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The outcomes of pathway database computations depend on pathway ontology

21 June 2018

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Identifying metabolic enzymes with multiple types of association evidence

21 June 2018

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21 June 2018

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Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

Predicting functional gene links from phylogenetic-statistical analyses of whole genomes

21 June 2018

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Assessing the limits of genomic data integration for predicting protein networks

21 June 2018

1 reference

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STRING: known and predicted protein-protein associations, integrated and transferred across organisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

Prolinks: a database of protein functional linkages derived from coevolution

21 June 2018

1 reference

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The KEGG resource for deciphering the genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: a combined computational approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

STRING: a database of predicted functional associations between proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

Protein interaction maps for complete genomes based on gene fusion events

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

A combined algorithm for genome-wide prediction of protein function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

Detecting protein function and protein-protein interactions from genome sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

Conserved clusters of functionally related genes in two bacterial genomes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

Constrained models of evolution lead to improved prediction of functional linkage from correlated gain and loss of genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

Refined phylogenetic profiles method for predicting protein-protein interactions

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

Use of contiguity on the chromosome to predict functional coupling.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

The Comprehensive Microbial Resource.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3247869

30 October 2018

Identifiers

DOI

10.1186/1471-2105-11-493

1 reference

journals/bmcbi/FerrerDK10

28 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

28 July 2017

1 reference