(Q33733921)

29 July 2017

title

Predicting strength and function for promoters of the Escherichia coli alternative sigma factor, sigmaE. (English)

1 reference

29 July 2017

0 references

2

Vivek K Mutalik

1 reference

29 July 2017

Virgil A Rhodius

1

1 reference

29 July 2017

publication date

1 February 2010

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

1 reference

29 July 2017

volume

107

1 reference

29 July 2017

issue

7

1 reference

29 July 2017

page(s)

2854-2859

1 reference

Promoter strength properties of the complete sigma E regulon of Escherichia coli and Salmonella enterica

29 July 2017

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1 reference

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28 July 2018

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28 July 2018

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28 July 2018

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Genetic dissection of the consensus sequence for the class 2 and class 3 flagellar promoters

28 July 2018

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28 July 2018

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From "simple" DNA-protein interactions to the macromolecular machines of gene expression

28 July 2018

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SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay

28 July 2018

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SigmaE regulates and is regulated by a small RNA in Escherichia coli

28 July 2018

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Anatomy of Escherichia coli sigma70 promoters.

28 July 2018

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Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteins

28 July 2018

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The structural basis for promoter -35 element recognition by the group IV sigma factors

28 July 2018

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28 July 2018

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The regulation of bacterial transcription initiation

28 July 2018

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Additivity in protein-DNA interactions: how good an approximation is it?

28 July 2018

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Structural basis of transcription activation: the CAP-alpha CTD-DNA complex

28 July 2018

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UPs and downs in bacterial transcription initiation: the role of the alpha subunit of RNA polymerase in promoter recognition

28 July 2018

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DNA binding sites: representation and discovery

28 July 2018

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Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit

28 July 2018

1 reference

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Identification of an UP element consensus sequence for bacterial promoters

28 July 2018

1 reference

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Specificity, free energy and information content in protein-DNA interactions

28 July 2018

1 reference

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Quantitative specificity of the Mnt repressor

28 July 2018

1 reference

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Escherichia coli promoter sequences: analysis and prediction

28 July 2018

1 reference

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Context-dependent effects of upstream A-tracts. Stimulation or inhibition of Escherichia coli promoter function

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840333

Stalling of Escherichia coli RNA polymerase in the +6 to +12 region in vivo is associated with tight binding to consensus promoter elements

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840333

Escherichia colipromoter sequences predictin vitroRNA polymerase selectivity

28 July 2018

1 reference

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Computer methods to locate signals in nucleic acid sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840333

Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840333

Promoter recognition by Escherichia coli RNA polymerase: effects of base substitutions in the -10 and -35 regions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840333

Lambda repressor recognizes the approximately 2-fold symmetric half-operator sequences asymmetrically

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840333

Consensus patterns in DNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840333

An assessment of neural network and statistical approaches for prediction of E. coli promoter sites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840333

Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals.

28 July 2018

1 reference

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Regulation of Tissue-Specific Gene Expression in Microcell Hybrids

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0915066107

The extracytoplasmic function (ECF) sigma factors

21 January 2018

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https://api.crossref.org/works/10.1073%2FPNAS.0915066107

Redundancy in cortical surface vessels supports persistent blood flow

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0915066107

The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) sigma factor protein family.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0915066107

Analysis of the sequence-specific interactions between Cro repressor and operator DNA by systematic base substitution experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0915066107

Functional diversity of plant-pollinator interaction webs enhances the persistence of plant communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0915066107

Differential ability of sigma(s) and sigma70 of Escherichia coli to utilize promoters containing half or full UP-element sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0915066107

Conserved and variable functions of the sigmaE stress response in related genomes

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2840333

Assays for transcription factor activity

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20133665

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Investigations of the modular structure of bacterial promoters

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20133665

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Determination of intrinsic transcription termination efficiency by RNA polymerase elongation rate

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20133665

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0915066107

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference