(Q33755665)

29 July 2017

title

A survey of statistical software for analysing RNA-seq data (English)

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29 July 2017

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Dexiang Gao

1

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29 July 2017

Jihye Kim

2

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29 July 2017

Hyunmin Kim

3

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29 July 2017

Tzu L Phang

4

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29 July 2017

Heather Selby

5

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29 July 2017

Aik Choon Tan

6

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29 July 2017

Tiejun Tong

7

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29 July 2017

publication date

1 October 2010

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29 July 2017

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29 July 2017

volume

5

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29 July 2017

issue

1

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29 July 2017

page(s)

56-60

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https://scigraph.springernature.com/pub.10.1186/1479-7364-5-1-56

29 July 2017

exact match

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cites work

baySeq: empirical Bayesian methods for identifying differential expression in sequence count data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

A scaling normalization method for differential expression analysis of RNA-seq data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

Transcript length bias in RNA-seq data confounds systems biology

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

Statistical inferences for isoform expression in RNA-Seq

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

Mapping and quantifying mammalian transcriptomes by RNA-Seq

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

Moderated statistical tests for assessing differences in tag abundance

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

Small-sample estimation of negative binomial dispersion, with applications to SAGE data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

Overdispersed logistic regression for SAGE: modelling multiple groups and covariates

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE).

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

Statistical significance for genomewide studies

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

Significance analysis of microarrays applied to the ionizing radiation response

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

Dynamics of gene expression revealed by comparison of serial analysis of gene expression transcript profiles from yeast grown on two different carbon sources

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500157

14 July 2018

Identifiers

DOI

10.1186/1479-7364-5-1-56

1 reference

Dimensions Publication ID

29 July 2017

1018115692

0 references

Fatcat ID

release_xmnfrrw6bzgppmxeuvn4zvtstm

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/xmnfrrw6bzgppmxeuvn4zvtstm

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3500157

1 reference

29 July 2017

1 reference