(Q33764146)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

title

Transcriptome assemblies for studying sex-biased gene expression in the guppy, Poecilia reticulata (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

0 references

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Axel Künstner

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Bonnie A Fraser

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

7

Detlef Weigel

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

author name string

Gideon Zipprich

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Verena A Kottler

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Stefan R Henz

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

Christine Dreyer

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

language of work or name

English

0 references

publication date

26 May 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

volume

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

page(s)

400

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

19 March 2020

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2164-15-400

0 references

cites work

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22 June 2018

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The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits

22 June 2018

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22 June 2018

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22 June 2018

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The evolutionary causes and consequences of sex-biased gene expression

22 June 2018

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22 June 2018

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22 June 2018

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Sex-biased transcriptome evolution in Drosophila

22 June 2018

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CD-HIT: accelerated for clustering the next-generation sequencing data

22 June 2018

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Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments

22 June 2018

1 reference

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Neural functions of matrix metalloproteinases: plasticity, neurogenesis, and disease

22 June 2018

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Disentangling the relationship between sex-biased gene expression and X-linkage.

22 June 2018

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Fast gapped-read alignment with Bowtie 2

22 June 2018

1 reference

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Rate of amino acid substitution is influenced by the degree and conservation of male-biased transcription over 50 myr of Drosophila evolution.

22 June 2018

1 reference

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ConDeTri--a content dependent read trimmer for Illumina data

22 June 2018

1 reference

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Emergence of male-biased genes on the chicken Z-chromosome: sex-chromosome contrasts between male and female heterogametic systems

22 June 2018

1 reference

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Forkhead transcription factors in ovarian function

22 June 2018

1 reference

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Extracellular matrix molecules, their receptors, and secreted proteases in synaptic plasticity

22 June 2018

1 reference

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

22 June 2018

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Proteinortho: detection of (co-)orthologs in large-scale analysis.

22 June 2018

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Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome

22 June 2018

1 reference

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Galanin systems in non-mammalian vertebrates with special focus on fishes.

22 June 2018

1 reference

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Towards a more nuanced understanding of the relationship between sex-biased gene expression and rates of protein-coding sequence evolution.

22 June 2018

1 reference

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Aromatase, brain sexualization and plasticity: the fish paradigm.

22 June 2018

1 reference

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Sex linkage, sex-specific selection, and the role of recombination in the evolution of sexually dimorphic gene expression

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

22 June 2018

1 reference

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Sex chromosomes and the evolution of sexual dimorphism: lessons from the genome

22 June 2018

1 reference

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Pigmentation pathway evolution after whole-genome duplication in fish

22 June 2018

1 reference

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A scaling normalization method for differential expression analysis of RNA-seq data

22 June 2018

1 reference

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Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies

22 June 2018

1 reference

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Females battle to suppress their inner male.

22 June 2018

1 reference

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A microarray analysis of sex- and gonad-biased gene expression in the zebrafish: evidence for masculinization of the transcriptome

22 June 2018

1 reference

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

22 June 2018

1 reference

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Sex determination diversity and sex chromosome evolution in poeciliid fish.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Are sex-biased genes more dispensable?

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Linkage analysis reveals the independent origin of Poeciliid sex chromosomes and a case of atypical sex inheritance in the guppy (Poecilia reticulata).

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

High-throughput functional annotation and data mining with the Blast2GO suite

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

The unique genomic properties of sex-biased genes: insights from avian microarray data

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Pleiotropic constraint hampers the resolution of sexual antagonism in vertebrate gene expression

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Rapid evolution of female-biased, but not male-biased, genes expressed in the avian brain

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Moderated statistical tests for assessing differences in tag abundance

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

ESTs and EST-linked polymorphisms for genetic mapping and phylogenetic reconstruction in the guppy, Poecilia reticulata

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Microarray-based gene expression profiles in multiple tissues of the domesticated silkworm, Bombyx mori

22 June 2018

1 reference

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The evolution of sex-biased genes and sex-biased gene expression

22 June 2018

1 reference

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PAML 4: phylogenetic analysis by maximum likelihood

22 June 2018

1 reference

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Proliferation, neurogenesis and regeneration in the non-mammalian vertebrate brain

22 June 2018

1 reference

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Widespread adaptive evolution of Drosophila genes with sex-biased expression

22 June 2018

1 reference

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Tissue-specific expression and regulation of sexually dimorphic genes in mice

22 June 2018

1 reference

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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

22 June 2018

1 reference

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Detecting sexual conflict and sexually antagonistic coevolution

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

In vitro culture of embryos of the guppy, Poecilia reticulata

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Bioconductor: open software development for computational biology and bioinformatics

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Subfunction partitioning, the teleost radiation and the annotation of the human genome.

22 June 2018

1 reference

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A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults

22 June 2018

1 reference

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Paucity of genes on the Drosophila X chromosome showing male-biased expression

22 June 2018

1 reference

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Sperm-female coevolution in Drosophila

22 June 2018

1 reference

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Sexual conflict and evolution in Trinidadian guppies.

22 June 2018

1 reference

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The rapid evolution of reproductive proteins

22 June 2018

1 reference

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Female guppies agree to differ: phenotypic and genetic variation in mate-choice behavior and the consequences for sexual selection.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Direct and indirect sexual selection and quantitative genetics of male traits in guppies (Poecilia reticulata).

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Negative genetic correlation between male sexual attractiveness and survival

22 June 2018

1 reference

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Sex and schooling behaviour in the Trinidadian guppy.

22 June 2018

1 reference

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Evaluation of the Rate of Evolution in Natural Populations of Guppies (Poecilia reticulata)

22 June 2018

1 reference

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Basic local alignment search tool

22 June 2018

1 reference

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Source of sexually dimorphic galanin-like immunoreactive projections in the teleost fishPoecilia latipinna

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Sexually dimorphic distribution of a galanin-like peptide in the central nervous system of the teleost fishPoecilia latipinna

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Female-biased expression on the X chromosome as a key step in sex chromosome evolution in threespine sticklebacks.

22 June 2018

1 reference

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Diffusion of foraging innovations in the guppy.

21 January 2018

1 reference

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Antagonistic roles of Dmrt1 and Foxl2 in sex differentiation via estrogen production in tilapia as demonstrated by TALENs

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-400

Sexual dimorphic expression of genes in gonads during early differentiation of a teleost fish, the Nile tilapia Oreochromis niloticus

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-400

The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-400

Ontogenetic complexity of sexual dimorphism and sex-specific selection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-400

Rapid evolution of reproductive barriers driven by sexual conflict.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-400

SHOREmap: simultaneous mapping and mutation identification by deep sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-400

The evolution of sexual dimorphism in animals: Hypotheses and tests

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-400

Sex-dependent selection differentially shapes genetic variation on and off the guppy Y chromosome.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Genetic linkage map of the guppy, Poecilia reticulata, and quantitative trait loci analysis of male size and colour variation.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Gametic isolation in guppies (Poecilia reticulata)

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Sex-limited mutations and the evolution of sexual dimorphism.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

30 October 2018

2 references

https://api.crossref.org/works/10.1186%2F1471-2164-15-400

21 January 2018

12 December 2020

Predicting the direction of ornament evolution in Trinidadian guppies (Poecilia reticulata)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4059875

Meiotic chromosomes and stages of sex chromosome evolution in fish: zebrafish, platyfish and guppy

30 October 2018

1 reference

12 December 2020

Variability of genetic sex determination in poeciliid fishes

1 reference

12 December 2020

THE FINE STRUCTURE OF THE OVARIAN FOLLICLE OF THE OVOVIVIPAROUS POECILIID FISH, LEBISTES RETICULATUS. I. MATURATION OF FOLLICULAR EPITHELIUM

1 reference

12 December 2020

Predation-associated differences in sex linkage of wild guppy coloration

1 reference

12 December 2020

SEX CHROMOSOMES AND THE EVOLUTION OF SEXUAL DIMORPHISM.

1 reference

12 December 2020

Sexual Dimorphism, Sexual Selection, and Adaptation in Polygenic Characters

1 reference

12 December 2020

REPRODUCTIVE ADAPTATIONS AMONG VIVIPAROUS FISHES (CYPRINODONTIFORMES: POECILIIDAE)

1 reference

12 December 2020

The Impact of Predation on Life History Evolution in Trinidadian Guppies (Poecilia reticulata)

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-15-400

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

19 March 2020

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-15-400

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24886435%20AND%20SRC:MED&resulttype=core&format=json