(Q33774403)

English

Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens

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Europe PubMed Central

PubMed publication ID

29 July 2017

Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens (English)

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

secondary metabolite

1 reference

based on heuristic

inferred from title

Phaeobacter inhibens

object named as

Phaeobacter inhibens

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

Natalia N. Ivanova

9

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Europe PubMed Central

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29 July 2017

Nikos C. Kyrpides

16

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29 July 2017

20

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29 July 2017

Hans-Peter Klenk

19

object named as

Hans-Peter Klenk

0 references

17

object named as

Tanja Woyke

0 references

Patrick S Chain

object named as

Patrick Chain

11

0 references

8

object named as

Amrita Pati

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Europe PubMed Central

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29 July 2017

7

object named as

Amy Chen

1 reference

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29 July 2017

12

object named as

John C Detter

1 reference

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29 July 2017

Thorsten Brinkhoff

21

object named as

Thorsten Brinkhoff

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29 July 2017

14

object named as

Manfred Rohde

1 reference

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29 July 2017

18

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Meinhard Simon

1 reference

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29 July 2017

Karen W Davenport

5

object named as

Karen Davenport

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29 July 2017

4

object named as

Jörn Petersen

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29 July 2017

3

object named as

Hazuki Teshima

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29 July 2017

Hajnalka Dalingault

6

object named as

Hajnalka Dalingault

1 reference

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29 July 2017

15

object named as

Sabine Gronow

1 reference

Europe PubMed Central

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29 July 2017

1

object named as

Marco Dogs

1 reference

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29 July 2017

2

object named as

Sonja Voget

1 reference

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29 July 2017

Lynne A. Goodwin

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object named as

Lynne A Goodwin

1 reference

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29 July 2017

author name string

Sonja Standfest

13

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29 July 2017

publication date

15 December 2013

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29 July 2017

Standards in genomic sciences

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29 July 2017

9

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29 July 2017

2

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29 July 2017

334-350

1 reference

Europe PubMed Central

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29 July 2017

The DNA bank network: the start from a german initiative

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336(T)), a representative of the Roseobacter clade

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566(T.).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Genome sequence of Phaeobacter caeruleus type strain (DSM 24564(T)), a surface-associated member of the marine Roseobacter clade

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

Genome sequence of the Leisingera aquimarina type strain (DSM 24565(T)), a member of the marine Roseobacter clade rich in extrachromosomal elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Molecular and phenotypic analyses reveal the non-identity of the Phaeobacter gallaeciensis type strain deposits CIP 105210T and DSM 17395.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Extrachromosomal, extraordinary and essential--the plasmids of the Roseobacter clade

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Genome sequence-based species delimitation with confidence intervals and improved distance functions

1 reference

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28 July 2018

The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation

1 reference

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28 July 2018

Algicidal lactones from the marine Roseobacter clade bacterium Ruegeria pomeroyi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Genetic analysis of the upper phenylacetate catabolic pathway in the production of tropodithietic acid by Phaeobacter gallaeciensis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Tropodithietic acid production in Phaeobacter gallaeciensis is regulated by N-acyl homoserine lactone-mediated quorum sensing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Roseobacticides: small molecule modulators of an algal-bacterial symbiosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

1 reference

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28 July 2018

Ruegeria halocynthiae sp. nov., isolated from the sea squirt Halocynthia roretzi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Ruegeria marina sp. nov., isolated from marine sediment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Prodigal: prokaryotic gene recognition and translation initiation site identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Inactivation of Vibrio anguillarum by attached and planktonic Roseobacter cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Leisingera nanhaiensis sp. nov., isolated from marine sediment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Bacterial extracellular polysaccharides involved in biofilm formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

IMG ER: a system for microbial genome annotation expert review and curation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Phaeobacter caeruleus sp. nov., a blue-coloured, colony-forming bacterium isolated from a marine electroactive biofilm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Ruegeria scottomollicae sp. nov., isolated from a marine electroactive biofilm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

A rapid bootstrap algorithm for the RAxML Web servers

1 reference

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28 July 2018

Phaeobacter arcticus sp. nov., a psychrophilic bacterium isolated from the Arctic

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

ALLPATHS: de novo assembly of whole-genome shotgun microreads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Genetic dissection of tropodithietic acid biosynthesis by marine roseobacters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Ruegeria mobilis sp. nov., a member of the Alphaproteobacteria isolated in Japan and Palau

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Biofilm formation by plant-associated bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Phaeobacter daeponensis sp. nov., isolated from a tidal flat of the Yellow Sea in Korea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Production of antibacterial compounds and biofilm formation by Roseobacter species are influenced by culture conditions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

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Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 ...

1 reference

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28 July 2018

Ecology, inhibitory activity, and morphogenesis of a marine antagonistic bacterium belonging to the Roseobacter clade.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Competitive interactions in mixed-species biofilms containing the marine bacterium Pseudoalteromonas tunicata.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Antibiotic production by a Roseobacter clade-affiliated species from the German Wadden Sea and its antagonistic effects on indigenous isolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

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The versatile bacterial type IV secretion systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Leisingera methylohalidivorans gen. nov., sp. nov., a marine methylotroph that grows on methyl bromide

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

Mechanisms of plasmid stable maintenance with special focus on plasmid addiction systems.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Multiple sequence alignment using partial order graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

The rhamnose pathway

1 reference

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Gene ontology: tool for the unification of biology

1 reference

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28 July 2018

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Roseobacter gallaeciensis sp. nov., a new marine bacterium isolated from rearings and collectors of the scallop Pecten maximus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Basic local alignment search tool

1 reference

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28 July 2018

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

28 July 2018

Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

Identification and biosynthesis of tropone derivatives and sulfur volatiles produced by bacteria of the marine Roseobacter clade

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

Taxonomic evaluation of the genera Ruegeria and Silicibacter: a proposal to transfer the genus Silicibacter Petursdottir and Kristjansson 1999 to the genus Ruegeria Uchino et al. 1999.

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

Ruegeria faecimaris sp. nov., isolated from a tidal flat sediment

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

Leisingera aquimarina sp. nov., isolated from a marine electroactive biofilm, and emended descriptions of Leisingera methylohalidivorans Schaefer et al. 2002, Phaeobacter daeponensis Yoon et al. 2007 and Phaeobacter inhibens Martens et al. 2006.

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

1 reference

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21 January 2018

The minimum information about a genome sequence (MIGS) specification

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

List of new names and new combinations previously effectively, but not validly, published

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

Origin and evolution of a novel DnaA-like plasmid replication type in Rhodobacterales

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

Discovery of complex mixtures of novel long-chain quorum sensing signals in free-living and host-associated marine alphaproteobacteria

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age.

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

Phylogeny and compatibility: plasmid classification in the genomics era.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062626

30 October 2018

Bacteria of the Roseobacter Clade Show Potential for Secondary Metabolite Production

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

Bemerkungen zu der Abhandlung der HH. Weselsky und Benedikt „Ueber einige Azoverbindungen”

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.4448212

21 January 2018

The Benefit of a Roseobacter Species on the Survival of Scallop Larvae

1 reference

https://pubmed.ncbi.nlm.nih.gov/24976890

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inhibitory activity of Phaeobacter strains against aquaculture pathogenic bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/24976890

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

How many bootstrap replicates are necessary?

1 reference

https://pubmed.ncbi.nlm.nih.gov/24976890

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.4056/SIGS.4448212

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

ResearchGate publication ID

0 references

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