(Q33776527)

29 July 2017

title

Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity (English)

1 reference

29 July 2017

Rob Knight

13

0 references

Noah Fierer

object named as

Noah Fierer

11

0 references

Laura Wegener Parfrey

1

object named as

Laura Wegener Parfrey

1 reference

29 July 2017

12

Jack A Gilbert

1 reference

29 July 2017

2

William A Walters

1 reference

29 July 2017

4

Jose C Clemente

1 reference

29 July 2017

7

Chinnappa Kodira

1 reference

29 July 2017

Christian L Lauber

3

1 reference

29 July 2017

Donna Berg-Lyons

5

1 reference

29 July 2017

Clotilde Teiling

6

1 reference

29 July 2017

Mohammed Mohiuddin

8

1 reference

29 July 2017

Julie Brunelle

9

1 reference

29 July 2017

Mark Driscoll

10

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29 July 2017

publication date

19 June 2014

1 reference

Frontiers in Microbiology

29 July 2017

published in

1 reference

29 July 2017

volume

5

1 reference

29 July 2017

page(s)

298

1 reference

Children of Senegal River Basin show the highest prevalence of Blastocystis sp. ever observed worldwide

29 July 2017

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4 July 2018

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4 July 2018

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Replenishing our defensive microbes

4 July 2018

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Topographic diversity of fungal and bacterial communities in human skin

4 July 2018

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Analyses of the stability and core taxonomic memberships of the human microbiome

4 July 2018

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Picomonas judraskeda gen. et sp. nov.: the first identified member of the Picozoa phylum nov., a widespread group of picoeukaryotes, formerly known as 'picobiliphytes'

4 July 2018

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The gut microbiota--masters of host development and physiology

4 July 2018

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Waiting for the human intestinal Eukaryotome

4 July 2018

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Animals in a bacterial world, a new imperative for the life sciences

4 July 2018

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Impacts of inundation and drought on eukaryote biodiversity in semi-arid floodplain soils

4 July 2018

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Gut microbiomes of Malawian twin pairs discordant for kwashiorkor

4 July 2018

1 reference

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Variable geographic distribution of Blastocystis subtypes and its potential implications

4 July 2018

1 reference

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Global biogeography of highly diverse protistan communities in soil

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy

4 July 2018

1 reference

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The Revised Classification of Eukaryotes

4 July 2018

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Diversity, stability and resilience of the human gut microbiota

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Blastocystosis in patients with gastrointestinal symptoms: a case-control study

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Molecular detection of eukaryotes in a single human stool sample from Senegal

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

A tool kit for quantifying eukaryotic rRNA gene sequences from human microbiome samples

4 July 2018

1 reference

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Lake microbial communities are resilient after a whole-ecosystem disturbance

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Human gut microbiome viewed across age and geography

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Structure, function and diversity of the healthy human microbiome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

New insights into Blastocystis spp.: a potential link with irritable bowel syndrome.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

The human microbiome: at the interface of health and disease

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Composition of human skin microbiota affects attractiveness to malaria mosquitoes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Do patterns of bacterial diversity along salinity gradients differ from those observed for macroorganisms?

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Hygiene hypothesis and autoimmune diseases

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Fungal community composition in neotropical rain forests: the influence of tree diversity and precipitation

4 July 2018

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TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata

4 July 2018

1 reference

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Microbial eukaryotes in the human microbiome: ecology, evolution, and future directions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Sources of bacteria in outdoor air across cities in the midwestern United States.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

A review of Dientamoeba fragilis carriage in humans: several reasons why this organism should be considered in the diagnosis of gastrointestinal illness.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Current Views on the Clinical Relevance of Blastocystis spp.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Characterization of rumen ciliate community composition in domestic sheep, deer, and cattle, feeding on varying diets, by means of PCR-DGGE and clone libraries

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Bacterial communities associated with the lichen symbiosis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Spatial variability in airborne bacterial communities across land-use types and their relationship to the bacterial communities of potential source environments

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Search and clustering orders of magnitude faster than BLAST

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Telonemia-specific environmental 18S rDNA PCR reveals unknown diversity and multiple marine-freshwater colonizations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

QIIME allows analysis of high-throughput community sequencing data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Epidemiology and control of human gastrointestinal parasites in children

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

PyNAST: a flexible tool for aligning sequences to a template alignment

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Bacterial community variation in human body habitats across space and time

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Infrequent marine-freshwater transitions in the microbial world.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

A rapid bootstrap algorithm for the RAxML Web servers

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Worlds within worlds: evolution of the vertebrate gut microbiota

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Diversification of unicellular eukaryotes: cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Evolution of mammals and their gut microbes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Global patterns in bacterial diversity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Molecular analysis of fungal microbiota in samples from healthy human skin and psoriatic lesions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Ecological and evolutionary forces shaping microbial diversity in the human intestine

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Abundant and diverse fungal microbiota in the murine intestine

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

UniFrac: a new phylogenetic method for comparing microbial communities

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Human intestinal parasites in the past: new findings and a review.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Phylogenetic approaches for describing and comparing the diversity of microbial communities

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063188

Global ecological patterns in uncultured Archaea.

4 July 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00298

A preliminary survey of lichen associated eukaryotes using pyrosequencing

21 January 2018

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https://api.crossref.org/works/10.3389%2FFMICB.2014.00298

Subulatomonas tetraspora nov. gen. nov. sp. is a member of a previously unrecognized major clade of eukaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00298

Some flagellates (Protista) from tropical marine sediments

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00298

Saccharomyces boulardii'. A Review of an Innovative Biotherapeutic Agent

21 January 2018

1 reference

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Active ulcerative colitis associated with low prevalence of Blastocystis and Dientamoeba fragilis infection

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00298

Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00298

Nature's microbiome: introduction

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00298

Increased sampling reveals novel lineages of Entamoeba: consequences of genetic diversity and host specificity for taxonomy and molecular detection

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00298

Blastocystis hominis and Dientamoeba fragilis in patients fulfilling irritable bowel syndrome criteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00298

From Animalcules to an Ecosystem: Application of Ecological Concepts to the Human Microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00298

Blastocystis: to treat or not to treat...

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24995004

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FMICB.2014.00298

1 reference

29 July 2017

1 reference

29 July 2017

1 reference