(Q33778115)

29 July 2017

title

Extension and validation of the GLYCAM force field parameters for modeling glycosaminoglycans (English)

1 reference

29 July 2017

1 reference

Geert-Jan Boons

6

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author name string

Arunima Singh

1

1 reference

29 July 2017

Matthew B Tessier

2

1 reference

29 July 2017

Kari Pederson

3

1 reference

29 July 2017

Xiaocong Wang

4

1 reference

29 July 2017

Andre P Venot

5

1 reference

29 July 2017

James H Prestegard

7

1 reference

29 July 2017

Robert J Woods

8

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29 July 2017

language of work or name

English

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publication date

9 February 2016

1 reference

Canadian Journal of Chemistry

29 July 2017

published in

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29 July 2017

volume

94

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29 July 2017

issue

11

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29 July 2017

page(s)

927-935

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The Interaction of Heparin Tetrasaccharides with Chemokine CCL5 Is Modulated by Sulfation Pattern and pH

29 July 2017

cites work

1 reference

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4 July 2018

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Dependence of pyranose ring puckering on anomeric configuration: methyl idopyranosides

4 July 2018

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Extension of the GLYCAM06 Biomolecular Force Field to Lipids, Lipid Bilayers and Glycolipids

4 July 2018

1 reference

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Molecular simulations of carbohydrates and protein-carbohydrate interactions: motivation, issues and prospects

4 July 2018

1 reference

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Improved side-chain torsion potentials for the Amber ff99SB protein force field

4 July 2018

1 reference

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Can current force fields reproduce ring puckering in 2-O-sulfo-alpha-L-iduronic acid? A molecular dynamics simulation study

4 July 2018

1 reference

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A 3D-structural model of unsulfated chondroitin from high-field NMR: 4-sulfation has little effect on backbone conformation

4 July 2018

1 reference

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Residual dipolar coupling investigation of a heparin tetrasaccharide confirms the limited effect of flexibility of the iduronic acid on the molecular shape of heparin

4 July 2018

1 reference

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On achieving experimental accuracy from molecular dynamics simulations of flexible molecules: aqueous glycerol

4 July 2018

1 reference

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Solvated ensemble averaging in the calculation of partial atomic charges

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5464424

GLYCAM06: a generalizable biomolecular force field. Carbohydrates

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5464424

Conformational studies on five octasaccharides isolated from chondroitin sulfate using NMR spectroscopy and molecular modeling

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5464424

Interactions between heparan sulfate and proteins: the concept of specificity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5464424

Sulfation patterns of glycosaminoglycans encode molecular recognition and activity

4 July 2018

1 reference

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Structural insights into biological roles of protein-glycosaminoglycan interactions

4 July 2018

1 reference

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Using NMRView to visualize and analyze the NMR spectra of macromolecules

4 July 2018

1 reference

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Simulation and modeling of nucleic acid structure, dynamics and interactions

4 July 2018

1 reference

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Exploring protein native states and large-scale conformational changes with a modified generalized born model

4 July 2018

1 reference

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The Cambridge Structural Database: a quarter of a million crystal structures and rising

4 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5464424

4 July 2018

https://api.crossref.org/works/10.1139%2FCJC-2015-0606

Functions of cell surface heparan sulfate proteoglycans

21 January 2018

1 reference

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4 July 2018

The Protein Data Bank

1 reference

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Conformational changes and anticoagulant activity of chondroitin sulfate following its O-sulfonation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5464424

NMR solution conformation of heparin-derived hexasaccharide

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5464424

Microbial adherence to and invasion through proteoglycans

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5464424

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5464424

N.m.r. and molecular-modelling studies of the solution conformation of heparin

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5464424

Dynamics in aqueous solutions of the pentasaccharide corresponding to the binding site of heparin for antithrombin III studied by NMR relaxation measurements

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5464424

Conformer populations of L-iduronic acid residues in glycosaminoglycan sequences

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5464424

Proteoglycans: structures and interactions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5464424

Does microsecond sugar ring flexing encode 3D-shape and bioactivity in the heparanome?

4 July 2018

1 reference

https://api.crossref.org/works/10.1139%2FCJC-2015-0606

CHARMM Additive All-Atom Force Field for Phosphate and Sulfate Linked to Carbohydrates

21 January 2018

1 reference

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Comparison of simple potential functions for simulating liquid water

21 January 2018

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https://api.crossref.org/works/10.1139%2FCJC-2015-0606

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

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https://api.crossref.org/works/10.1139%2FCJC-2015-0606

Studies on the Conformation of Heparin by1H and13C NMR Spectroscopy

21 January 2018

1 reference

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Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1139%2FCJC-2015-0606

Dermatan sulphate is released by proteinases of common pathogenic bacteria and inactivates antibacterial alpha-defensin

21 January 2018

1 reference

12 December 2020

Conformational study of synthetic delta 4-uronate monosaccharides and glycosaminoglycan-derived disaccharides

1 reference

12 December 2020

Synthesis and structural study of two new heparin-like hexasaccharides

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12 December 2020

The effect of variation of substitution on the solution conformation of heparin: a spectroscopic and molecular modelling study

1 reference

12 December 2020

Identifiers

DOI

10.1139/CJC-2015-0606

1 reference

29 July 2017

1 reference

29 July 2017

1 reference