(Q33781060)

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The Validation and Implications of Using Whole Genome Sequencing as a Replacement for Traditional Serotyping for a National Salmonella Reference Laboratory.

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28649236%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

The Validation and Implications of Using Whole Genome Sequencing as a Replacement for Traditional Serotyping for a National Salmonella Reference Laboratory (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28649236%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

whole genome sequencing

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based on heuristic

inferred from title

4

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23 March 2020

Peter Kruczkiewicz

5

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23 March 2020

Eduardo N Taboada

6

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23 March 2020

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Anil Nichani

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23 March 2020

James Robertson

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James Robertson

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23 March 2020

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Chris A Yachison

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23 March 2020

Catherine Yoshida

2

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23 March 2020

Matthew Walker

7

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23 March 2020

Aleisha Reimer

8

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23 March 2020

Sara Christianson

9

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23 March 2020

PulseNet Canada Steering Committee

11

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23 March 2020

Celine Nadon

12

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23 March 2020

publication date

9 June 2017

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23 March 2020

Frontiers in Microbiology

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23 March 2020

8

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23 March 2020

1044

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28649236%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Evaluation of Molecular Methods for Identification of Salmonella Serovars.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Identification of Salmonella for public health surveillance using whole genome sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Estimates of foodborne illness-related hospitalizations and deaths in Canada for 30 specified pathogens and unspecified agents

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Salmonella serotype determination utilizing high-throughput genome sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Extensive genetic variability linked to IS26 insertions in the fljB promoter region of atypical monophasic variants of Salmonella enterica serovar Typhimurium

1 reference

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4 July 2018

Same species, different diseases: how and why typhoidal and non-typhoidal Salmonella enterica serovars differ

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Omics approaches in food safety: fulfilling the promise?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Outbreak-associated Salmonella enterica serotypes and food Commodities, United States, 1998-2008.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Genetics and evolution of the Salmonella galactose-initiated set of o antigens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Population structure of Salmonella enterica serovar 4,[5],12:b:- strains and likely sources of human infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

A Canadian application of one health: integration of Salmonella data from various Canadian surveillance programs (2005-2010).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Estimates of the burden of foodborne illness in Canada for 30 specified pathogens and unspecified agents, circa 2006.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Public health genomics and the new molecular epidemiology of bacterial pathogens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Variable expression of O:61 in Salmonella group C2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Multilocus sequence typing as a replacement for serotyping in Salmonella enterica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

FLASH: fast length adjustment of short reads to improve genome assemblies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Methodologies for Salmonella enterica subsp. enterica subtyping: gold standards and alternatives

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Effect of deletion of genes involved in lipopolysaccharide core and O-antigen synthesis on virulence and immunogenicity of Salmonella enterica serovar typhimurium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Global monitoring of Salmonella serovar distribution from the World Health Organization Global Foodborne Infections Network Country Data Bank: results of quality assured laboratories from 2001 to 2007.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

BLAST+: architecture and applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

WHO Global Salm-Surv external quality assurance system for serotyping of Salmonella isolates from 2000 to 2007.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Multiplex PCR-based method for identification of common clinical serotypes of Salmonella enterica subsp. enterica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Sequencing and comparative analysis of flagellin genes fliC, fljB, and flpA from Salmonella

1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

Using laboratory-based surveillance data for prevention: an algorithm for detecting Salmonella outbreaks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

A mechanised microtechnique for salmonella serotyping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465390

4 July 2018

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1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2017.01044

21 January 2018

Multi-laboratory evaluation of the rapid genoserotyping array (SGSA) for the identification of Salmonella serovars

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2017.01044

21 January 2018

Identifiers

10.3389/FMICB.2017.01044

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28649236%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

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23 March 2020

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Europe PubMed Central

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23 March 2020

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