(Q33784308)

29 July 2017

Interfacial folding and membrane insertion of designed peptides studied by molecular dynamics simulations (English)

1 reference

29 July 2017

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1

Wonpil Im

1 reference

29 July 2017

2

Charles L Brooks

1 reference

PubMed ID

15860587

29 July 2017

language of work or name

English

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publication date

28 April 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

1 reference

29 July 2017

102

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29 July 2017

19

1 reference

29 July 2017

6771-6776

1 reference

PubMed ID

15860587

describes a project that uses

29 July 2017

molecular dynamics simulation

1 reference

based on heuristic

inferred from title

cites work

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Tilt angles of transmembrane model peptides in oriented and non-oriented lipid bilayers as determined by 2H solid-state NMR.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Modeling amyloid beta-peptide insertion into lipid bilayers

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Understanding nature's design for a nanosyringe

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

An Implicit Membrane Generalized Born Theory for the Study of Structure, Stability, and Interactions of Membrane Proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Protein–lipid interactions studied with designed transmembrane peptides: role of hydrophobic matching and interfacial anchoring (Review)

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Simulation of pore formation in lipid bilayers by mechanical stress and electric fields

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Construction of helix-bundle membrane proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Conformational partitioning of the fusion peptide of HIV-1 gp41 and its structural analogs in bilayer membranes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Theoretical and computational models of ion channels

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Antimicrobial peptides of multicellular organisms

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

A Monte Carlo study of peptide insertion into lipid bilayers: equilibrium conformations and insertion mechanisms

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Membrane structure and fusion-triggering conformational change of the fusion domain from influenza hemagglutinin

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Helical membrane protein folding, stability, and evolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Membrane protein folding and stability: physical principles

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Bacterial toxins: friends or foes?

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Insertion and hairpin formation of membrane proteins: a Monte Carlo study

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Experimentally determined hydrophobicity scale for proteins at membrane interfaces

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Insertion of peptide chains into lipid membranes: an off-lattice Monte Carlo dynamics model

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Designing transmembrane alpha-helices that insert spontaneously

4 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408135102

Protein chemistry at membrane interfaces: non-additivity of electrostatic and hydrophobic interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408135102

Interfacial folding and membrane insertion of a designed helical peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408135102

Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408135102

Energetics of ion conduction through the K+ channel.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408135102

Generalized born model with a simple smoothing function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408135102

Replica-exchange molecular dynamics method for protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408135102

De novo folding of membrane proteins: an exploration of the structure and NMR properties of the fd coat protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408135102

Sensitivity of single membrane-spanning alpha-helical peptides to hydrophobic mismatch with a lipid bilayer: effects on backbone structure, orientation, and extent of membrane incorporation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408135102

Helix tilt of the M2 transmembrane peptide from influenza A virus: an intrinsic property

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408135102

Optimized atomic radii for protein continuum electrostatics solvation forces.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100747

Constant-pH molecular dynamics using continuous titration coordinates

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15860587

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A microscopic view of helix propagation: N and C-terminal helix growth in alanine helices

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15860587

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0408135102

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference

PubMed ID

15860587