(Q33786693)

29 July 2017

title

Evolutionary distances in the twilight zone--a rational kernel approach (English)

1 reference

29 July 2017

Roland F Schwarz

1

0 references

Frank Förster

object named as

Frank Förster

3

0 references

Florian Markowetz

object named as

Florian Markowetz

7

0 references

Jörg Schultz

6

object named as

Jörg Schultz

1 reference

29 July 2017

William Fletcher

2

1 reference

29 July 2017

Benjamin Merget

4

1 reference

29 July 2017

Matthias Wolf

5

1 reference

29 July 2017

language of work or name

English

0 references

publication date

31 December 2010

1 reference

29 July 2017

1 reference

29 July 2017

volume

5

1 reference

29 July 2017

issue

12

1 reference

29 July 2017

page(s)

e15788

1 reference

Creative Commons Attribution 4.0 International

29 July 2017

copyright license

start time

31 December 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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Pattern-based phylogenetic distance estimation and tree reconstruction.

28 July 2018

1 reference

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INDELible: a flexible simulator of biological sequence evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013127

Probabilistic phylogenetic inference with insertions and deletions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013127

ITS2 data corroborate a monophyletic chlorophycean DO-group (Sphaeropleales).

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013127

Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013127

Alignment uncertainty and genomic analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013127

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

28 July 2018

1 reference

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Is multiple-sequence alignment required for accurate inference of phylogeny?

28 July 2018

1 reference

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

28 July 2018

1 reference

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BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013127

The average common substring approach to phylogenomic reconstruction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013127

ProbCons: Probabilistic consistency-based multiple sequence alignment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013127

Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta)

28 July 2018

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013127

Recursions for statistical multiple alignment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013127

A new sequence distance measure for phylogenetic tree construction

28 July 2018

1 reference

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Molecular phylogenetics: state-of-the-art methods for looking into the past

28 July 2018

1 reference

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Profile hidden Markov models

28 July 2018

1 reference

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A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013127

Maximum likelihood alignment of DNA sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013127

An evolutionary model for maximum likelihood alignment of DNA sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013127

Inching toward reality: an improved likelihood model of sequence evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013127

Maximum likelihood of evolutionary trees: hardness and approximation.

28 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015788

Toward extracting all phylogenetic information from matrices of evolutionary distances

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015788

QDist--quartet distance between evolutionary trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015788

Computing a nearest symmetric positive semidefinite matrix

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015788

ProfDist: a tool for the construction of large phylogenetic trees based on profile distances

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015788

Multiple Sequence Alignment Accuracy and Phylogenetic Inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015788

The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21209825

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Additive evolutionary trees

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21209825

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A kinome of 2600 in the ciliateParamecium tetraurelia

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21209825

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0015788

1 reference

29 July 2017

0 references

1 reference

1 reference

29 July 2017

1 reference