(Q33789592)

English

High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease

scientific article

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scholarly article

1 reference

Europe PubMed Central

29 July 2017

High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease (English)

1 reference

Europe PubMed Central

29 July 2017

inflammatory bowel diseases

0 references

1 reference

based on heuristic

inferred from title

Julian Parkhill

8

1 reference

Europe PubMed Central

29 July 2017

3

object named as

Carol Churcher

0 references

object named as

Alan W Walker

1

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9

object named as

Gordon Dougan

1 reference

Europe PubMed Central

29 July 2017

Liljana Petrovska-Holmes

10

object named as

Liljana Petrovska

1 reference

Europe PubMed Central

29 July 2017

author name string

Jeremy D Sanderson

2

1 reference

Europe PubMed Central

29 July 2017

Gareth C Parkes

4

1 reference

Europe PubMed Central

29 July 2017

Barry N Hudspith

5

1 reference

Europe PubMed Central

29 July 2017

Neil Rayment

6

1 reference

Europe PubMed Central

29 July 2017

Jonathan Brostoff

7

1 reference

Europe PubMed Central

29 July 2017

publication date

10 January 2011

1 reference

Europe PubMed Central

29 July 2017

BMC Microbiology

1 reference

Europe PubMed Central

29 July 2017

11

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Europe PubMed Central

29 July 2017

7

1 reference

Europe PubMed Central

29 July 2017

https://scigraph.springernature.com/pub.10.1186/1471-2180-11-7

0 references

The blessings and curses of intestinal inflammation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

The impact of the microbiota on the pathogenesis of IBD: lessons from mouse infection models

1 reference

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4 July 2018

Virus-plus-susceptibility gene interaction determines Crohn's disease gene Atg16L1 phenotypes in intestine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

A human gut microbial gene catalogue established by metagenomic sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Inflammatory bowel disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Molecular inventory of faecal microflora in patients with Crohn's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Molecular diversity of Escherichia coli in the human gut: new ecological evidence supporting the role of adherent-invasive E. coli (AIEC) in Crohn's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Worlds within worlds: evolution of the vertebrate gut microbiota

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Dynamics of the mucosa-associated flora in ulcerative colitis patients during remission and clinical relapse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

The genetics and immunopathogenesis of inflammatory bowel disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Bacteria in the intestine, helpful residents or enemies from within?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Epithelial-cell recognition of commensal bacteria and maintenance of immune homeostasis in the gut.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

NCBI BLAST: a better web interface

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Molecular analysis of the gut microbiota of identical twins with Crohn's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Microbial host interactions in IBD: implications for pathogenesis and therapy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Unstable composition of the fecal microbiota in ulcerative colitis during clinical remission

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

How to get more out of molecular fingerprints: practical tools for microbial ecology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Microbial influences in inflammatory bowel diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Mycobacterium avium subspecies paratuberculosis and Crohn's disease: a systematic review and meta-analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Unravelling the pathogenesis of inflammatory bowel disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Microbial diversity of inflamed and noninflamed gut biopsy tissues in inflammatory bowel disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Patchy distribution of mucosal lesions in ileal Crohn's disease is not linked to differences in the dominant mucosa-associated bacteria: a study using fluorescence in situ hybridization and temporal temperature gradient gel electrophoresis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

The role of microbes in Crohn's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Molecular comparison of dominant microbiota associated with injured versus healthy mucosa in ulcerative colitis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Adherent-invasive Escherichia coli and Crohnʼs disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

High prevalence of Escherichia coli belonging to the B2+D phylogenetic group in inflammatory bowel disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Culture-independent analyses of temporal variation of the dominant fecal microbiota and targeted bacterial subgroups in Crohn's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Differences between tissue-associated intestinal microfloras of patients with Crohn's disease and ulcerative colitis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Temperature gradient gel electrophoresis of fecal 16S rRNA reveals active Escherichia coli in the microbiota of patients with ulcerative colitis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Comparative study of the intestinal mucus barrier in normal and inflamed colon.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

The bacteriology of biopsies differs between newly diagnosed, untreated, Crohn's disease and ulcerative colitis patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Assembly of the human intestinal microbiota

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Impact of chronic conditions on quality of life in patients with inflammatory bowel disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Search for localized dysbiosis in Crohn's disease ulcerations by temporal temperature gradient gel electrophoresis of 16S rRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Biodiversity of the mucosa-associated microbiota is stable along the distal digestive tract in healthy individuals and patients with IBD.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Diversity of the human intestinal microbial flora

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

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1 reference

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Integration of microbial ecology and statistics: a test to compare gene libraries

1 reference

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4 July 2018

Clinical epidemiology of inflammatory bowel disease: Incidence, prevalence, and environmental influences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Commensal bacteria (normal microflora), mucosal immunity and chronic inflammatory and autoimmune diseases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

ARB: a software environment for sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Dysbiosis in inflammatory bowel disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

The immunological and genetic basis of inflammatory bowel disease

1 reference

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Inflammatory bowel disease in a Swedish twin cohort: a long-term follow-up of concordance and clinical characteristics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Alterations of the dominant faecal bacterial groups in patients with Crohn's disease of the colon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Mucosal and invading bacteria in patients with inflammatory bowel disease compared with controls.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Pathogenesis and immune mechanisms of chronic inflammatory bowel diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Role of the faecal stream in the maintenance of Crohn's colitis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

4 July 2018

Low counts of Faecalibacterium prausnitzii in colitis microbiota.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032643

30 October 2018

Faecal microbiota profile of Crohn's disease determined by terminal restriction fragment length polymorphism analysis.

1 reference

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30 October 2018

Detection of Actinobacteria cultivated from environmental samples reveals bias in universal primers

1 reference

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30 October 2018

Prevalence of Bacteroides and Prevotella spp. in ulcerative colitis

1 reference

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30 October 2018

Molecular characterization of the bacteria adherent to human colorectal mucosa.

1 reference

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30 October 2018

Molecular characterization of rectal mucosa-associated bacterial flora in inflammatory bowel disease.

1 reference

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30 October 2018

Mucosal flora in inflammatory bowel disease

1 reference

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30 October 2018

Host-Mediated Inflammation Disrupts the Intestinal Microbiota and Promotes the Overgrowth of Enterobacteriaceae

1 reference

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30 October 2018

Sulfate-reducing bacteria in human feces and their association with inflammatory bowel diseases

1 reference

https://pubmed.ncbi.nlm.nih.gov/21219646

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Abnormal microbiota composition in the ileocolonic mucosa of Crohn's disease patients as revealed by polymerase chain reaction-denaturing gradient gel electrophoresis

1 reference

https://pubmed.ncbi.nlm.nih.gov/21219646

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set

1 reference

https://pubmed.ncbi.nlm.nih.gov/21219646

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Efficacy of topical metronidazole (10 percent) in the treatment of anorectal Crohn's disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/21219646

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The intestinal mucus layer from patients with inflammatory bowel disease harbors high numbers of bacteria compared with controls

1 reference

https://pubmed.ncbi.nlm.nih.gov/21219646

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

VARIATION BETWEEN OBSERVERS IN DESCRIBING MUCOSAL APPEARANCES IN PROCTOCOLITIS

1 reference

https://pubmed.ncbi.nlm.nih.gov/21219646

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

IgA response to symbiotic bacteria as a mediator of gut homeostasis

1 reference

https://pubmed.ncbi.nlm.nih.gov/21219646

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mucosa-associated bacterial flora of the human colon

1 reference

https://pubmed.ncbi.nlm.nih.gov/21219646

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Controlled trial of metronidazole treatment for prevention of Crohn's recurrence after ileal resection

1 reference

https://pubmed.ncbi.nlm.nih.gov/21219646

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2180-11-7

1 reference

Europe PubMed Central

29 July 2017

1 reference

Europe PubMed Central

29 July 2017

1 reference

Europe PubMed Central

29 July 2017

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0 references

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