(Q33802269)

29 July 2017

title

A greedy alignment-free distance estimator for phylogenetic inference (English)

1 reference

29 July 2017

1 reference

5

Srinivas Aluru

1 reference

29 July 2017

Sharma V Thankachan

1

1 reference

29 July 2017

Sriram P Chockalingam

series ordinal

2

1 reference

29 July 2017

Yongchao Liu

series ordinal

3

1 reference

29 July 2017

Ambujam Krishnan

series ordinal

4

1 reference

29 July 2017

publication date

7 June 2017

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29 July 2017

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29 July 2017

volume

18

1 reference

29 July 2017

issue

Suppl 8

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29 July 2017

page(s)

238

1 reference

MissMax: alignment-free sequence comparison with mismatches through filtering and heuristics

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5471951

Kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5471951

Estimating mutation distances from unaligned genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5471951

Dendroscope: An interactive viewer for large phylogenetic trees

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5471951

The average common substring approach to phylogenomic reconstruction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5471951

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5471951

Alignment-free sequence comparison-a review

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5471951

The neighbor-joining method: a new method for reconstructing phylogenetic trees

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5471951

Effectiveness of measures requiring and not requiring prior sequence alignment for estimating the dissimilarity of natural sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5471951

MrBayes on a graphics processing unit.

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-017-1658-0

Fast alignment-free sequence comparison using spaced-word frequencies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-017-1658-0

Statistical measures of DNA sequence dissimilarity under Markov chain models of base composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-017-1658-0

ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-017-1658-0

A Provably Efficient Algorithm for the k-Mismatch Average Common Substring Problem.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-017-1658-0

ALFRED: A Practical Method for Alignment-Free Distance Computation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-017-1658-0

Linear pattern matching algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-017-1658-0

The LCA Problem Revisited

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-017-1658-0

Genome characteristics of a generalist marine bacterial lineage

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-017-1658-0

Longest common substrings with k mismatches

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-017-1658-0

Linear-Time Longest-Common-Prefix Computation in Suffix Arrays and Its Applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-017-1658-0

BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28617225

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12859-017-1658-0

1 reference

journals/bmcbi/ThankachanCLKA17

29 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

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29 July 2017

1 reference