(Q33802981)

29 July 2017

pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana (English)

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29 July 2017

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Matthias Hirsch-Hoffmann

object named as

Matthias Hirsch-Hoffmann

2

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Katja Baerenfaller

object named as

Katja Baerenfaller

1

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Wilhelm Gruissem

object named as

Wilhelm Gruissem

8

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author name string

Julia Svozil

3

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29 July 2017

Roger Hull

4

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29 July 2017

Doris Russenberger

5

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29 July 2017

Sylvain Bischof

6

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29 July 2017

Qingtao Lu

7

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29 July 2017

Sacha Baginsky

9

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29 July 2017

24 January 2011

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29 July 2017

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29 July 2017

3

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29 July 2017

3

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29 July 2017

225-237

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Applying mass spectrometry-based proteomics to genetics, genomics and network biology

29 July 2017

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

21 January 2018

The PeptideAtlas Project

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

TANDEM: matching proteins with tandem mass spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

A statistical model for identifying proteins by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Open source system for analyzing, validating, and storing protein identification data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

PepSplice: cache-efficient search algorithms for comprehensive identification of tandem mass spectra.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Phosphorylation-specific MS/MS scoring for rapid and accurate phosphoproteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Discovery and revision of Arabidopsis genes by proteogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

The Proteomics Identifications database: 2010 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

A high-quality catalog of the Drosophila melanogaster proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

SUBA: the Arabidopsis Subcellular Database.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

plprot: a comprehensive proteome database for different plastid types.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

PPDB, the Plant Proteomics Database at Cornell

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Gene expression analysis, proteomics, and network discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Computational prediction of proteotypic peptides for quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Selected reaction monitoring for quantitative proteomics: a tutorial

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

The Arabidopsis Information Resource (TAIR): gene structure and function annotation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Functional annotation of the Arabidopsis genome using controlled vocabularies

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

In-depth proteome analysis of Arabidopsis leaf peroxisomes combined with in vivo subcellular targeting verification indicates novel metabolic and regulatory functions of peroxisomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

The mitochondrial proteome database: MitoP2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Annotating genes of known and unknown function by large-scale coexpression analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Plant peroxisomes respire in the light: some gaps of the photorespiratory C2 cycle have become filled--others remain.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

Finding the genes in genomic DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

The minimum information about a proteomics experiment (MIAPE)

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC0IB00078G

21 January 2018

Identifiers

DOI

10.1039/C0IB00078G

1 reference

29 July 2017

1 reference