(Q33803455)

English

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence (English)

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Aegilops tauschii

object named as

Aegilops tauschii

1 reference

based on heuristic

inferred from title

7

object named as

Jan Dvorak

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

1

object named as

Frank M You

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

author name string

Naxin Huo

2

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Karin R Deal

3

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Yong Q Gu

4

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Ming-Cheng Luo

5

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Patrick E McGuire

6

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Olin D Anderson

8

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

language of work or name

0 references

publication date

25 January 2011

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

12

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

59

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

describes a project that uses

massive parallel sequencing

1 reference

based on heuristic

inferred from title

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes

1 reference

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4 July 2018

High-throughput SNP discovery and assay development in common bean

1 reference

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4 July 2018

RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

Artificial and natural duplicates in pyrosequencing reads of metagenomic data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

Identifying and removing artificial replicates from 454 pyrosequencing data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

Calling SNPs without a reference sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

Fast and accurate long-read alignment with Burrows-Wheeler transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

A first-generation haplotype map of maize

1 reference

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4 July 2018

Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

SHRiMP: accurate mapping of short color-space reads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

Evaluation of next generation sequencing platforms for population targeted sequencing studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

BatchPrimer3: a high throughput web application for PCR and sequencing primer design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

The Rice Annotation Project Database (RAP-DB): 2008 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

SNP discovery via 454 transcriptome sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

Accuracy and quality of massively parallel DNA pyrosequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

Sequence composition, organization, and evolution of the core Triticeae genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

An SNP map of the human genome generated by reduced representation shotgun sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041743

4 July 2018

Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-59

21 January 2018

Rapid development of PCR-based genome-specific repetitive DNA junction markers in wheat.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-59

21 January 2018

Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-59

21 January 2018

Reconstruction of the phylogeny of the genus Triticum from variation in repeated nucleotide sequences

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-59

21 January 2018

A general approach to single-nucleotide polymorphism discovery.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-59

21 January 2018

Systematic artifacts in metagenomes from complex microbial communities.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-59

21 January 2018

Single-nucleotide polymorphism frequency in a set of selected lines of bread wheat (Triticum aestivum L.).

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-59

21 January 2018

MIPS plant genome information resources

1 reference

https://pubmed.ncbi.nlm.nih.gov/21266061

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The origin of Triticum spelta and its free-threshing hexaploid relatives

1 reference

https://pubmed.ncbi.nlm.nih.gov/21266061

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mining single-nucleotide polymorphisms from hexaploid wheat ESTs

1 reference

https://pubmed.ncbi.nlm.nih.gov/21266061

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-12-59

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Dimensions Publication ID

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-59

9 September 2019

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

ResearchGate publication ID

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