(Q33803762)

29 July 2017

title

DNA methylation of the first exon is tightly linked to transcriptional silencing (English)

1 reference

29 July 2017

0 references

Joseph M Scandura

7

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author name string

Fabienne Brenet

1

1 reference

29 July 2017

Michelle Moh

2

1 reference

29 July 2017

Patricia Funk

3

1 reference

29 July 2017

Erika Feierstein

4

1 reference

29 July 2017

Agnes J Viale

5

1 reference

29 July 2017

Nicholas D Socci

6

1 reference

29 July 2017

language of work or name

English

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publication date

18 January 2011

1 reference

29 July 2017

1 reference

29 July 2017

volume

6

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29 July 2017

issue

1

1 reference

29 July 2017

page(s)

e14524

1 reference

Creative Commons Attribution 4.0 International

29 July 2017

copyright license

start time

18 January 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/3022582

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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1 reference

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Conservation and divergence of methylation patterning in plants and animals

4 July 2018

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Modifications of RNA polymerase II are pivotal in regulating gene expression states

4 July 2018

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Human DNA methylomes at base resolution show widespread epigenomic differences

4 July 2018

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4 July 2018

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The presence of RNA polymerase II, active or stalled, predicts epigenetic fate of promoter CpG islands

4 July 2018

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Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming

4 July 2018

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Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

4 July 2018

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DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution

4 July 2018

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Histone modifications at human enhancers reflect global cell-type-specific gene expression

4 July 2018

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The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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DNA methylation landscapes: provocative insights from epigenomics

4 July 2018

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4 July 2018

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4 July 2018

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Changes in the distributions and dynamics of polycomb repressive complexes during embryonic stem cell differentiation

4 July 2018

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Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA.

4 July 2018

1 reference

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CG dinucleotide clustering is a species-specific property of the genome

4 July 2018

1 reference

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Phenotypic plasticity and the epigenetics of human disease

4 July 2018

1 reference

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Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome

4 July 2018

1 reference

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Gene body-specific methylation on the active X chromosome

4 July 2018

1 reference

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DNA methylation dictates histone H3K4 methylation

4 July 2018

1 reference

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Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer

4 July 2018

1 reference

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DNA methylation profiling of human chromosomes 6, 20 and 22

4 July 2018

1 reference

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Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Dosage compensation in mammals: fine-tuning the expression of the X chromosome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Comparative isoschizomer profiling of cytosine methylation: the HELP assay

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Microarray-based DNA methylation profiling: technology and applications

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Genomic DNA methylation: the mark and its mediators

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

The Polycomb group protein EZH2 directly controls DNA methylation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Analysis of repetitive element DNA methylation by MethyLight

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

A high-resolution map of active promoters in the human genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Genome-wide assembly and analysis of alternative transcripts in mouse

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Transforming growth factor beta-induced cell cycle arrest of human hematopoietic cells requires p57KIP2 up-regulation.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

A simple method for estimating global DNA methylation using bisulfite PCR of repetitive DNA elements

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

CpG content affects gene silencing in mice: evidence from novel transgenes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

DNA methylation density influences the stability of an epigenetic imprint and Dnmt3a/b-independent de novo methylation.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

LINE drive. retrotransposition and genome instability

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

MethyLight: a high-throughput assay to measure DNA methylation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Methylation-induced repression--belts, braces, and chromatin

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

CpG island methylator phenotype in colorectal cancer

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

The DNA methylation paradox

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Alterations in DNA methylation: a fundamental aspect of neoplasia

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

The role of DNA methylation in cancer genetic and epigenetics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

CpG islands in vertebrate genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

CpG-rich islands and the function of DNA methylation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Targeted mutation of the DNA methyltransferase gene results in embryonic lethality

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Use of restriction enzymes to study eukaryotic DNA methylation: II. The symmetry of methylated sites supports semi-conservative copying of the methylation pattern.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Dependence of transcriptional repression on CpG methylation density

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3022582

Identification of critical CpG sites for repression of L1 transcription by DNA methylation

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21267076

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0014524

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference