(Q33805165)

29 July 2017

title

Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria (English)

1 reference

29 July 2017

1 reference

Linnéa Smeds

2

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Hans Ellegren

series ordinal

3

object named as

Hans Ellegren

1 reference

29 July 2017

1

Robert Ekblom

1 reference

29 July 2017

language of work or name

English

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publication date

12 June 2014

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29 July 2017

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29 July 2017

volume

15

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29 July 2017

page(s)

467

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Sequencing depth and coverage: key considerations in genomic analyses

29 July 2017

cites work

1 reference

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Finding the lost treasures in exome sequencing data

4 July 2018

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Discovering motifs that induce sequencing errors

4 July 2018

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Characterizing and measuring bias in sequence data

4 July 2018

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Systematic biases in DNA copy number originate from isolation procedures

4 July 2018

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The de novo assembly of mitochondrial genomes of the extinct passenger pigeon (Ectopistes migratorius) with next generation sequencing

4 July 2018

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Improving detection of copy-number variation by simultaneous bias correction and read-depth segmentation

4 July 2018

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Special features of RAD Sequencing data: implications for genotyping

4 July 2018

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The genomic landscape of species divergence in Ficedula flycatchers

4 July 2018

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De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome.

4 July 2018

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4 July 2018

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

4 July 2018

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Summarizing and correcting the GC content bias in high-throughput sequencing

4 July 2018

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Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes.

4 July 2018

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Repetitive DNA and next-generation sequencing: computational challenges and solutions

4 July 2018

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4 July 2018

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Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems

4 July 2018

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4 July 2018

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Short reads, circular genome: skimming solid sequence to construct the bighorn sheep mitochondrial genome.

4 July 2018

1 reference

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Precise manipulation of chromosomes in vivo enables genome-wide codon replacement

4 July 2018

1 reference

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Systematic bias in high-throughput sequencing data and its correction by BEADS.

4 July 2018

1 reference

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Sequence-specific error profile of Illumina sequencers

4 July 2018

1 reference

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Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

4 July 2018

1 reference

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General lack of global dosage compensation in ZZ/ZW systems? Broadening the perspective with RNA-seq

4 July 2018

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A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

4 July 2018

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The complete mitochondrial genome of Radix balthica (Pulmonata, Basommatophora), obtained by low coverage shot gun next generation sequencing

4 July 2018

1 reference

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Assembly of large genomes using second-generation sequencing

4 July 2018

1 reference

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The sequence and de novo assembly of the giant panda genome

4 July 2018

1 reference

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Computation for ChIP-seq and RNA-seq studies

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070552

Computational methods for discovering structural variation with next-generation sequencing

4 July 2018

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What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)

4 July 2018

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Sensitive and accurate detection of copy number variants using read depth of coverage

4 July 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

4 July 2018

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Fast and accurate short read alignment with Burrows-Wheeler transform

4 July 2018

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RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing

4 July 2018

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Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

4 July 2018

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Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

4 July 2018

1 reference

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The CGView Server: a comparative genomics tool for circular genomes

4 July 2018

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4 July 2018

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Mitogenomic analyses of caniform relationships

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070552

NUMTs in sequenced eukaryotic genomes.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070552

Precise determination of mitochondrial DNA copy number in human skeletal and cardiac muscle by a PCR-based assay: lack of change of copy number with age.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070552

Mitochondrial DNA molecules and virtual number of mitochondria per cell in mammalian cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070552

The complete mitochondrial genome of the dusky shark Carcharhinus obscurus

4 July 2018

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Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-15-467

MITOS: improved de novo metazoan mitochondrial genome annotation

21 January 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4070552

The inheritance of mitochondrial DNA heteroplasmy: random drift, selection or both?

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24923674

12 December 2020

inferred from PubMed ID database lookup

Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24923674

12 December 2020

inferred from PubMed ID database lookup

Genetic variation and population structure in Scandinavian wolverine (Gulo gulo) populations

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24923674

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2164-15-467

1 reference

Dimensions Publication ID

29 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-15-467

release_axspokloerdnnoub7be7gzlfpq

9 September 2019

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/axspokloerdnnoub7be7gzlfpq

24 November 2022

mapped directly with Wikidata item

PMC publication ID

4070552

1 reference

29 July 2017

1 reference