(Q34252845)

English

De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome.

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22548759%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome (English)

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22548759%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Douglas Senalik

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22548759%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Dariusz Grzebelus

4

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22548759%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Philipp W Simon

6

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30 January 2020

Marek Szklarczyk

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Marek Szklarczyk

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30 January 2020

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Massimo Iorizzo

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30 January 2020

David Spooner

5

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30 January 2020

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1 May 2012

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30 January 2020

BMC Plant Biology

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22548759%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

12

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30 January 2020

61

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30 January 2020

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MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

massive parallel sequencing

1 reference

based on heuristic

inferred from title

https://scigraph.springernature.com/pub.10.1186/1471-2229-12-61

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An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform

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6 July 2018

Mitochondrial genome sequencing helps show the evolutionary mechanism of mitochondrial genome formation in Brassica

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6 July 2018

Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis

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6 July 2018

Determination of the melon chloroplast and mitochondrial genome sequences reveals that the largest reported mitochondrial genome in plants contains a significant amount of DNA having a nuclear origin

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6 July 2018

Extending the limited transfer window hypothesis to inter-organelle DNA migration

1 reference

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6 July 2018

Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber

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6 July 2018

Isolation and analysis of high quality nuclear DNA with reduced organellar DNA for plant genome sequencing and resequencing

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6 July 2018

Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing.

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6 July 2018

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

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6 July 2018

The mitochondrial genome of the legume Vigna radiata and the analysis of recombination across short mitochondrial repeats

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6 July 2018

Gene transfer: anything goes in plant mitochondria

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes.

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6 July 2018

High-throughput sequencing of complete human mtDNA genomes from the Philippines

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6 July 2018

The complete chloroplast genome sequence of date palm (Phoenix dactylifera L.).

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm Silene latifolia.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Read length and repeat resolution: exploring prokaryote genomes using next-generation sequencing technologies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

High-throughput DNA sequencing--concepts and limitations

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Visualizing genomes: techniques and challenges

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Recombination and the maintenance of plant organelle genome stability.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

The chloroplast genome sequence of mungbean (Vigna radiata) determined by high-throughput pyrosequencing: structural organization and phylogenetic relationships

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Heteroplasmy and stoichiometric complexity of plant mitochondrial genomes--though this be madness, yet there's method in't.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Discovery of the rpl10 gene in diverse plant mitochondrial genomes and its probable replacement by the nuclear gene for chloroplast RPL10 in two lineages of angiosperms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Characterization of microsatellites and gene contents from genome shotgun sequences of mungbean (Vigna radiata (L.) Wilczek)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

An integrated pipeline for next-generation sequencing and annotation of mitochondrial genomes

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6 July 2018

The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Cytonuclear interactions can favor the evolution of genomic imprinting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

The puzzle of plastid evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

DNA transfer from organelles to the nucleus: the idiosyncratic genetics of endosymbiosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Sequencing of natural strains of Arabidopsis thaliana with short reads

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Coordination of gene expression between organellar and nuclear genomes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Angiosperm mitochondrial genomes and mutations.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Comparisons among two fertile and three male-sterile mitochondrial genomes of maize

1 reference

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6 July 2018

Horizontal gene transfer in plants

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Complete plastid genome sequence of Daucus carota: implications for biotechnology and phylogeny of angiosperms

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6 July 2018

Kalign--an accurate and fast multiple sequence alignment algorithm

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6 July 2018

Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Genome sequencing in microfabricated high-density picolitre reactors

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6 July 2018

The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs

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6 July 2018

Versatile and open software for comparing large genomes

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6 July 2018

Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Mitochondrial genomes: anything goes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413510

6 July 2018

Punctuated evolution of mitochondrial gene content: high and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution

1 reference

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6 July 2018

Multiple losses and transfers to the nucleus of two mitochondrial succinate dehydrogenase genes during angiosperm evolution

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6 July 2018

A phylogeny of Apiaceae tribe Scandiceae: evidence from nuclear ribosomal DNA internal transcribed spacer sequences

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6 July 2018

Mitochondrial evolution

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6 July 2018

Two copies of a DNA element, ?Wendy?, in the chloroplast chromosome of Chlamydomonas reinhardtii between rearranged gene clusters

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6 July 2018

Rapid isolation of high molecular weight plant DNA

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6 July 2018

Transfer of rpl22 to the nucleus greatly preceded its loss from the chloroplast and involved the gain of an intron.

1 reference

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The complete mitochondrial genome of the large yellow croaker, Larimichthys crocea (Perciformes, Sciaenidae): unusual features of its control region and the phylogenetic position of the Sciaenidae

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21 January 2018

Chloroplast genome sequences from total DNA for plant identification.

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21 January 2018

Complex organization of the mitochondrial genome of petaloid CMS carrot.

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21 January 2018

Transfer of rps14 from the mitochondrion to the nucleus in maize implied integration within a gene encoding the iron-sulphur subunit of succinate dehydrogenase and expression by alternative splicing

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21 January 2018

Repeated, recent and diverse transfers of a mitochondrial gene to the nucleus in flowering plants

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21 January 2018

Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts.

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21 January 2018

Comparative analysis of structural diversity and sequence evolution in plant mitochondrial genes transferred to the nucleus

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21 January 2018

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21 January 2018

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28 October 2018

Many Parallel Losses of infA from Chloroplast DNA during Angiosperm Evolution with Multiple Independent Transfers to the Nucleus

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https://pubmed.ncbi.nlm.nih.gov/22548759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ABySS-Explorer: visualizing genome sequence assemblies

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https://pubmed.ncbi.nlm.nih.gov/22548759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mitochondrial DNA of Vitis vinifera and the issue of rampant horizontal gene transfer

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https://pubmed.ncbi.nlm.nih.gov/22548759

12 December 2020

based on heuristic

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Next-generation sequencing of the Trichinella murrelli mitochondrial genome allows comprehensive comparison of its divergence from the principal agent of human trichinellosis, Trichinella spiralis

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2229-12-61

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22548759%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22548759%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22548759%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

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