(Q33805379)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21272306%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

title

Relationship between amino acid composition and gene expression in the mouse genome (English)

1 reference

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21 January 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21272306%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

author name string

Reiko F Kikuno

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21272306%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

publication date

27 January 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21272306%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21272306%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

volume

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21272306%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

page(s)

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21272306%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 2.0 Generic

21 January 2020

copyright license

start time

27 January 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1756-0500-4-20

0 references

cites work

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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The action of selection on codon bias in the human genome is related to frequency, complexity, and chronology of amino acids

4 July 2018

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4 July 2018

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Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein

4 July 2018

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4 July 2018

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4 July 2018

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CpG mutation rates in the human genome are highly dependent on local GC content

4 July 2018

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4 July 2018

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Tissue-specific codon usage and the expression of human genes

4 July 2018

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4 July 2018

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The signature of selection mediated by expression on human genes

4 July 2018

1 reference

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Isochores and tissue-specificity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

Translational selection and yeast proteome evolution

4 July 2018

1 reference

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Predicting gene expression levels from codon biases in alpha-proteobacterial genomes

4 July 2018

1 reference

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Selection on Human Genes as Revealed by Comparisons to Chimpanzee cDNA

4 July 2018

1 reference

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Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models

4 July 2018

1 reference

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Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis

4 July 2018

1 reference

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A compendium of gene expression in normal human tissues

4 July 2018

1 reference

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Codon usage bias covaries with expression breadth and the rate of synonymous evolution in humans, but this is not evidence for selection

4 July 2018

1 reference

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Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans.

4 July 2018

1 reference

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tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes

4 July 2018

1 reference

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Codon usage tabulated from international DNA sequence databases: status for the year 2000

4 July 2018

1 reference

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Codon usage bias and tRNA abundance in Drosophila

4 July 2018

1 reference

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What drives codon choices in human genes?

4 July 2018

1 reference

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The vertebrate genome: isochores and evolution

4 July 2018

1 reference

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Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

4 July 2018

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Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.

4 July 2018

1 reference

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4 July 2018

Codon selection in yeast

1 reference

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DNA methylation and the frequency of CpG in animal DNA.

4 July 2018

1 reference

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The heterogeneity of thymine methyl group origin in DNA pyrimidine isostichs of developing sea urchin embryos

4 July 2018

1 reference

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Codon usage and tRNA content in unicellular and multicellular organisms

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

An analysis of codon usage in mammals: selection or mutation bias?

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

The selection-mutation-drift theory of synonymous codon usage

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

The preferential codon usages in variable and constant regions of immunoglobulin genes are quite distinct from each other

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

Evaluation of the effect of CpG hypermutability on human codon substitution.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

The universal trend of amino acid gain-loss is caused by CpG hypermutability

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

Nearly neutrality and the evolution of codon usage bias in eukaryotic genomes

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

Predicting gene expression level from codon usage bias.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

Strong and weak male mutation bias at different sites in the primate genomes: insights from the human-chimpanzee comparison.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

Codon bias as a factor in regulating expression via translation rate in the human genome.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

Evidence for codon bias selection at the pre-mRNA level in eukaryotes.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

Modeling the impact of DNA methylation on the evolution of BRCA1 in mammals

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

Predicting gene expression from sequence

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

Gene expression level influences amino acid usage, but not codon usage, in the tsetse fly endosymbiont Wigglesworthia.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

A multigene assessment of phylogenetic relationships within the dasyurid marsupial subfamily Sminthopsinae

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

Influence of the 3'-UTR-length of mKIAA cDNAs and their Sequence Features to the mRNA Expression Level in the Brain

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038927

Translational selection on codon usage in Xenopus laevis

30 October 2018

1 reference

12 December 2020

No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans

1 reference

12 December 2020

Codons and nearest-neighbor nucleotide pairs in mammalian messenger RNA

1 reference

12 December 2020

Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting tran

1 reference

12 December 2020

Translational selection and molecular evolution

1 reference

12 December 2020

Amino acid requirements of the growing mouse

1 reference

12 December 2020

Identifiers

DOI

10.1186/1756-0500-4-20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21272306%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

21 January 2020

1 reference

https://scigraph.springernature.com/pub.10.1186/1756-0500-4-20

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21272306%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

PubMed publication ID

21272306

1 reference