(Q33807280)

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The Dynameomics rotamer library: amino acid side chain conformations and dynamics from comprehensive molecular dynamics simulations in water

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scholarly article

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Europe PubMed Central

PubMed publication ID

29 July 2017

The Dynameomics rotamer library: amino acid side chain conformations and dynamics from comprehensive molecular dynamics simulations in water (English)

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

1 reference

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inferred from title

Valerie Daggett

2

object named as

Valerie Daggett

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

author name string

Alexander D Scouras

1

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

publication date

1 February 2011

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Protein Science

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

20

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

2

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

341-352

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Generation of a consensus protein domain dictionary

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

Dynameomics: a comprehensive database of protein dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

The intrinsic conformational propensities of the 20 naturally occurring amino acids and reflection of these propensities in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

Statistical and conformational analysis of the electron density of protein side chains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

The origin of protein sidechain order parameter distributions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

The ASTRAL Compendium in 2004

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

A consensus view of fold space: Combining SCOP, CATH, and the Dali Domain Dictionary

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

Rotamer libraries in the 21st century

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

The interrelationships of side-chain and main-chain conformations in proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

The penultimate rotamer library

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

Barstar has a highly dynamic hydrophobic core: evidence from molecular dynamics simulations and nuclear magnetic resonance relaxation data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

CATH--a hierarchic classification of protein domain structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

Bayesian statistical analysis of protein side-chain rotamer preferences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

SCOP: a structural classification of proteins database for the investigation of sequences and structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

The interpretation of protein structures: Estimation of static accessibility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

A 500 ps molecular dynamics simulation study of interleukin-1 beta in water. Correlation with nuclear magnetic resonance spectroscopy and crystallography.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048419

4 July 2018

Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1002%2FPRO.565

21 January 2018

Methods for molecular dynamics simulations of protein folding/unfolding in solution

1 reference

https://api.crossref.org/works/10.1002%2FPRO.565

21 January 2018

A microscopic view of peptide and protein solvation

1 reference

https://api.crossref.org/works/10.1002%2FPRO.565

21 January 2018

Studies on the conformation of amino acids. XI. Analysis of the observed side group conformation in proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/21280126

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular dynamics of native protein. I. Computer simulation of trajectories

1 reference

https://pubmed.ncbi.nlm.nih.gov/21280126

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular dynamics of native protein. II. Analysis and nature of motion

1 reference

https://pubmed.ncbi.nlm.nih.gov/21280126

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural heterogeneity in protein crystals

1 reference

https://pubmed.ncbi.nlm.nih.gov/21280126

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/PRO.565

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

release_ppcwvqsktja2dpzmqp3l643u44

1 reference

https://api.fatcat.wiki/v0/release/ppcwvqsktja2dpzmqp3l643u44

24 November 2022

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PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

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