(Q33813959)

29 July 2017

title

Cleaning up the 'Bigmessidae': molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae (English)

1 reference

29 July 2017

1 reference

molecular phylogenetics

0 references

Pectiniidae

object named as

Pectiniidae

1 reference

Trachyphylliidae

1 reference

Faviidae

1 reference

Merulinidae

1 reference

Danwei Huang

1

1 reference

29 July 2017

Wilfredo Y Licuanan

series ordinal

2

1 reference

29 July 2017

Andrew H Baird

series ordinal

3

1 reference

29 July 2017

Hironobu Fukami

series ordinal

4

1 reference

29 July 2017

publication date

7 February 2011

1 reference

29 July 2017

published in

BMC Evolutionary Biology

1 reference

29 July 2017

volume

11

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29 July 2017

page(s)

37

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-11-37

29 July 2017

exact match

0 references

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

When trees grow too long: investigating the causes of highly inaccurate bayesian branch-length estimates.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Cryptic failure of partitioned Bayesian phylogenetic analyses: lost in the land of long trees

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Branch length estimation and divergence dating: estimates of error in Bayesian and maximum likelihood frameworks

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

ITS2 sequence-structure analysis in phylogenetics: a how-to manual for molecular systematics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Multiple alignment of DNA sequences with MAFFT

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

More evidence for pervasive paraphyly in scleractinian corals: systematic study of Southeast Asian Faviidae (Cnidaria; Scleractinia) based on molecular and morphological data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Is there a molecular key to the level of "biological species" in eukaryotes? A DNA guide

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Morphological plasticity in scleractinian corals

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

A rapid bootstrap algorithm for the RAxML Web servers

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Mitochondrial and nuclear genes suggest that stony corals are monophyletic but most families of stony corals are not (Order Scleractinia, Class Anthozoa, Phylum Cnidaria)

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

ITS2 data corroborate a monophyletic chlorophycean DO-group (Sphaeropleales).

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

jModelTest: phylogenetic model averaging

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Recent developments in the MAFFT multiple sequence alignment program

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

4 July 2018

Distinguishing species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Phylogenetic reconstruction using secondary structures of Internal Transcribed Spacer 2 (ITS2, rDNA): finding the molecular and morphological gap in Caribbean gorgonian corals

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Molecular and morphological supertree of stony corals (Anthozoa: Scleractinia) using matrix representation parsimony

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta)

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Geographic differences in species boundaries among members of the Montastraea annularis complex based on molecular and morphological markers

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

A deep-sea slant on the molecular phylogeny of the Scleractinia

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Conventional taxonomy obscures deep divergence between Pacific and Atlantic corals

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Ribosomal ITS sequences and plant phylogenetic inference

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

MrBayes 3: Bayesian phylogenetic inference under mixed models

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria).

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

DAMBE: software package for data analysis in molecular biology and evolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

MRBAYES: Bayesian inference of phylogenetic trees

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Molecular evolution of a portion of the mitochondrial 16S ribosomal gene region in scleractinian corals

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042006

Analysis of the mitochondrial 12S rRNA gene supports a two-clade hypothesis of the evolutionary history of scleractinian corals

4 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-37

The evolutionary history of the coral genus Acropora (Scleractinia, Cnidaria) based on a mitochondrial and a nuclear marker: reticulation, incomplete lineage sorting, or morphological convergence?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-37

Slow mitochondrial COI sequence evolution at the base of the metazoan tree and its implications for DNA barcoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-37

Morphological and ITS1, 5.8S, and partial ITS2 ribosomal DNA sequence distinctions between two species Platygyra (Cnidaria: Scleractinia) from Hong Kong [corrected].

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-37

The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-37

TNT, a free program for phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-37

The its Region of Nuclear Ribosomal DNA: A Valuable Source of Evidence on Angiosperm Phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-37

The ITS2 Database III--sequences and structures for phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-37

ProfDistS: (profile-) distance based phylogeny on sequence--structure alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-37

Corallite wall and septal microstructure in scleractinian reef corals: comparison of molecular clades within the family Faviidae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-37

Phenotypic variation in the coral Platygyra daedalea in Kenya: morphometry and genetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-37

ProfDist: a tool for the construction of large phylogenetic trees based on profile distances

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-37

Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-37

Re-evaluation of the systematics of the endemic corals of Brazil by molecular data

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-37

Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21299898

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cell interactions and the control of gene activity during early development of Xenopus laevis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21299898

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2148-11-37

1 reference

Dimensions Publication ID

29 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-11-37

9 September 2019

1 reference

29 July 2017

1 reference