(Q33820574)

29 July 2017

Dynamics of the folded and unfolded villin headpiece (HP35) measured with ultrafast 2D IR vibrational echo spectroscopy (English)

1 reference

29 July 2017

0 references

3

Michael D Fayer

1 reference

29 July 2017

Jean K Chung

1

1 reference

PubMed ID

21321226

29 July 2017

Megan C Thielges

series ordinal

2

1 reference

PubMed ID

21321226

29 July 2017

language of work or name

English

0 references

publication date

14 February 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

1 reference

29 July 2017

108

1 reference

29 July 2017

9

1 reference

29 July 2017

3578-3583

1 reference

Enhanced modeling via network theory: Adaptive sampling of Markov state models

29 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Dynamics of a myoglobin mutant enzyme: 2D IR vibrational echo experiments and simulations.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

The Two Dimensional Vibrational Echo of a Nitrile Probe of the Villin HP35 Protein.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Characterizing the dynamics of functionally relevant complexes of formate dehydrogenase

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Residue-specific structural kinetics of proteins through the union of isotope labeling, mid-IR pulse shaping, and coherent 2D IR spectroscopy

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Quantitative determination of site-specific conformational distributions in an unfolded protein by solid-state nuclear magnetic resonance

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Applications of 2D IR spectroscopy to peptides, proteins, and hydrogen-bond dynamics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Using an amino acid fluorescence resonance energy transfer pair to probe protein unfolding: application to the villin headpiece subdomain and the LysM domain

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Native and unfolded cytochrome c--comparison of dynamics using 2D-IR vibrational echo spectroscopy

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Direct observation of fast protein conformational switching

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Amide I two-dimensional infrared spectroscopy of proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Two-dimensional infrared spectra reveal relaxation of the nonnucleoside inhibitor TMC278 complexed with HIV-1 reverse transcriptase

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Neuroglobin dynamics observed with ultrafast 2D-IR vibrational echo spectroscopy.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Viscosity-dependent protein dynamics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Folding free-energy landscape of villin headpiece subdomain from molecular dynamics simulations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Substrate binding and protein conformational dynamics measured by 2D-IR vibrational echo spectroscopy

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

A genetically encoded infrared probe.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Site-specific conversion of cysteine thiols into thiocyanate creates an IR probe for electric fields in proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Electric fields at the active site of an enzyme: direct comparison of experiment with theory.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Dynamics of water probed with vibrational echo correlation spectroscopy

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Myoglobin-CO Substate Structures and Dynamics: Multidimensional Vibrational Echoes and Molecular Dynamics Simulations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Myoglobin-CO conformational substate dynamics: 2D vibrational echoes and MD simulations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

The role of structure, energy landscape, dynamics, and allostery in the enzymatic function of myoglobin

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Protein denaturation: a small-angle X-ray scattering study of the ensemble of unfolded states of cytochrome c.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

NMR structure of the 35-residue villin headpiece subdomain

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Denatured states of proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

The Energy Landscapes and Motions of Proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Nitrile and thiocyanate IR probes: molecular dynamics simulation studies.

4 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1100587108

Electrostatic fields near the active site of human aldose reductase: 1. New inhibitors and vibrational stark effect measurements

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1100587108

Multistate folding of the villin headpiece domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1100587108

Solvent viscosity dependence of the protein folding dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1100587108

Frequency-frequency correlation functions and apodization in two-dimensional infrared vibrational echo spectroscopy: a new approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1100587108

Taking apart the two-dimensional infrared vibrational echo spectra: more information and elimination of distortions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1100587108

Vibrational Stark effects calibrate the sensitivity of vibrational probes for electric fields in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1100587108

Use of MM-PB/SA in estimating the free energies of proteins: application to native, intermediates, and unfolded villin headpiece

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048147

Viscosity and density of aqueous solutions of urea and guanidine hydrochloride

29 October 2018

1 reference

12 December 2020

Probing dynamics of complex molecular systems with ultrafast 2D IR vibrational echo spectroscopy

1 reference

12 December 2020

Dynamic NMR Line-Shape Analysis Demonstrates that the Villin Headpiece Subdomain Folds on the Microsecond Time Scale

1 reference

12 December 2020

Residue Specific Resolution of Protein Folding Dynamics Using Isotope-Edited Infrared Temperature Jump Spectroscopy†

1 reference

12 December 2020

Simulated unfolded-state ensemble and the experimental NMR structures of villin headpiece yield similar wide-angle solution X-ray scattering profiles

1 reference

12 December 2020

Vibrational Echo Studies of Protein Dynamics

1 reference

12 December 2020

Experimental characterization of the denatured state ensemble of proteins

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1100587108

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference

PubMed ID

21321226