(Q33821544)

29 July 2017

0 references

Meta-analysis of muscle transcriptome data using the MADMuscle database reveals biologically relevant gene patterns (English)

1 reference

29 July 2017

0 references

1 reference

Audrey Bihouée

3

0 references

Raluca Teusan

Raluca Teusan

4

0 references

Gérard Ramstein

Gérard Ramstein

11

0 references

Emeric Dubois

Emeric Dubois

2

0 references

Marja Steenman

Marja Steenman

5

0 references

Yann Péréon

8

Yann Péréon

1 reference

29 July 2017

12

Rémi Houlgatte

1 reference

29 July 2017

Daniel Baron

1

1 reference

29 July 2017

Philippe Jourdon

6

1 reference

29 July 2017

Armelle Magot

7

1 reference

29 July 2017

Reiner Veitia

9

1 reference

29 July 2017

Frédérique Savagner

10

1 reference

29 July 2017

language of work or name

English

0 references

publication date

16 February 2011

1 reference

29 July 2017

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29 July 2017

volume

12

1 reference

29 July 2017

page(s)

113

1 reference

Creative Commons Attribution 2.0 Generic

29 July 2017

copyright license

start time

16 February 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Increasing the number of thyroid lesions classes in microarray analysis improves the relevance of diagnostic markers

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Molecular risk stratification in advanced heart failure patients

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Meta-analysis of expression signatures of muscle atrophy: gene interaction networks in early and late stages

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

GeneChaser: identifying all biological and clinical conditions in which genes of interest are differentially expressed

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Androgen-induced masculinization in rainbow trout results in a marked dysregulation of early gonadal gene expression profiles

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Strategy for encoding and comparison of gene expression signatures.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Mutant huntingtin's effects on striatal gene expression in mice recapitulate changes observed in human Huntington's disease brain and do not differ with mutant huntingtin length or wild-type huntingtin dosage

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

The conserved transcriptome in human and rodent male gametogenesis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Gene Aging Nexus: a web database and data mining platform for microarray data on aging

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Defining the gene expression signature of rhabdomyosarcoma by meta-analysis.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Comparative microarray analysis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Human fetal neuroblast and neuroblastoma transcriptome analysis confirms neuroblast origin and highlights neuroblastoma candidate genes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Cockayne syndrome group B protein (CSB) plays a general role in chromatin maintenance and remodeling

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Nuclear envelope dystrophies show a transcriptional fingerprint suggesting disruption of Rb-MyoD pathways in muscle regeneration

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

The expression signature of in vitro senescence resembles mouse but not human aging

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Analysis of orthologous gene expression between human pulmonary adenocarcinoma and a carcinogen-induced murine model

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

L2L: a simple tool for discovering the hidden significance in microarray expression data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Cellular and molecular signatures of muscle regeneration: current concepts and controversies in adult myogenesis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

List of lists-annotated (LOLA): a database for annotation and comparison of published microarray gene lists

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

From signatures to models: understanding cancer using microarrays

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Integrative analysis of the cancer transcriptome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Independence and reproducibility across microarray platforms

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Insights into host responses against pathogens from transcriptional profiling.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

A module map showing conditional activity of expression modules in cancer

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Coexpression analysis of human genes across many microarray data sets

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Orthologous gene-expression profiling in multi-species models: search for candidate genes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

ONCOMINE: a cancer microarray database and integrated data-mining platform

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Open source clustering software

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Comparing genomic expression patterns across species identifies shared transcriptional profile in aging

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Genew: the Human Gene Nomenclature Database, 2004 updates

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Small lymphocytic lymphoma, marginal zone B-cell lymphoma, and mantle cell lymphoma exhibit distinct gene-expression profiles allowing molecular diagnosis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Comparison and meta-analysis of microarray data: from the bench to the computer desk.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Evaluation of gene expression measurements from commercial microarray platforms

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

A gene-coexpression network for global discovery of conserved genetic modules

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Statistical issues and methods for meta-analysis of microarray data: a case study in prostate cancer

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Integration and cross-validation of high-throughput gene expression data: comparing heterogeneous data sets

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Expression profiling and pharmacogenomics of muscle and muscle disease

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

GoMiner: a resource for biological interpretation of genomic and proteomic data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

A molecular signature of metastasis in primary solid tumors

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Options available--from start to finish--for obtaining data from DNA microarrays II.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Gene expression comparison of biopsies from Duchenne muscular dystrophy (DMD) and normal skeletal muscle

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

A new non-linear normalization method for reducing variability in DNA microarray experiments

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Microarray analysis of normal and dystrophic skeletal muscle

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Analysis of matched mRNA measurements from two different microarray technologies

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Large-scale analysis of the human and mouse transcriptomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Missing value estimation methods for DNA microarrays

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Expression profiling in the muscular dystrophies: identification of novel aspects of molecular pathophysiology

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Functional discovery via a compendium of expression profiles

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Gene ontology: tool for the unification of biology

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Systematic determination of genetic network architecture

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Cluster analysis and display of genome-wide expression patterns

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Expression monitoring by hybridization to high-density oligonucleotide arrays

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Effect of seawater transfer on CYP1A gene expression in rainbow trout gills

4 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-113

Expression profiling of candidate genes during ovary-to-testis trans-differentiation in rainbow trout masculinized by androgens

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-113

Combining multiple microarray studies and modeling interstudy variation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-113

Functional annotation and network reconstruction through cross-platform integration of microarray data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-113

Differences in gene expression between B-cell chronic lymphocytic leukemia and normal B cells: a meta-analysis of three microarray studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-113

Identification of GATA3 as a breast cancer prognostic marker by global gene expression meta-analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-113

Lack of correct data format and comparability limits future integrative microarray research.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-113

Forensic genetics and ethical, legal and social implications beyond the clinic

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-113

Large-scale temporal gene expression profiling during gonadal differentiation and early gametogenesis in rainbow trout.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-113

Regenerated mdx mouse skeletal muscle shows differential mRNA expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-113

Gene expression profiling of Duchenne muscular dystrophy skeletal muscle

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-113

Multiple-laboratory comparison of microarray platforms

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-113

An evolutionary and functional analysis of FoxL2 in rainbow trout gonad differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-113

Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3049149

Gene expression profiling in the early phases of DMD: a constant molecular signature characterizes DMD muscle from early postnatal life throughout disease progression

29 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-113

A cross-study comparison of gene expression studies for the molecular classification of lung cancer

21 January 2018

1 reference

12 December 2020

Identification and characterization of a non-satellite cell muscle resident progenitor during postnatal development

1 reference

12 December 2020

Integrative analysis of multiple gene expression profiles applied to liver cancer study

1 reference

12 December 2020

Reinnervation in Duchenne muscular dystrophy

1 reference

12 December 2020

Single-fiber electromyography in neuromuscular disorders: correlation of muscle histochemistry, single-fiber electromyography, and clinical findings

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-12-113

1 reference

Dimensions Publication ID

29 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-113

9 September 2019

1 reference

29 July 2017

1 reference